Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g01002 ATGGCACCGGCAAAGGTATTCGGGGTCTGCAGCAGAGCACTAATGGCGGCGGCTAAGGGGGCTGCGTCTGGTGGAGGGACGGCAGCAAAGGCGGCGGCTACAGCAAAGCCTCGACAGAATATGGCCTTACAGAAGCCAGTGCCCGTCTCTTCGCAGCTCGGCAAGTTTCTCGGCGCATCTCAAGCTTCTCGGAGCGAAGCCGTCAAGAAAGTTTGGGAGCACGTCAAGCTCCACAATCTTCAGAATCCTAGTAACAAGAAGGAGATCTTCTGTGATGAAAAGTTGAAGACCATTTTTGATGGGAAAGATAGTGTTGGGTTCACCGAGATTGCCAAGCTGCTTTCTAAGCACTTCGTGAAATCAGGCTG 368 0.5299 MAPAKVFGVCSRALMAAAKGAASGGGTAAKAAATAKPRQNMALQKPVPVSSQLGKFLGASQASRSEAVKKVWEHVKLHNLQNPSNKKEIFCDEKLKTIFDGKDSVGFTEIAKLLSKHFVKSG 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g01002 122 SMART swib_2 43 122 IPR019835 -
Bva08g01002 122 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 121 - -
Bva08g01002 122 CDD SWIB-MDM2_like 47 118 - -
Bva08g01002 122 Gene3D SWIB/MDM2 domain 38 122 IPR036885 -
Bva08g01002 122 ProSiteProfiles SWIB/MDM2 domain profile. 42 120 IPR003121 -
Bva08g01002 122 PANTHER UPSTREAM ACTIVATION FACTOR SUBUNIT UAF30-LIKE 1 121 - -
Bva08g01002 122 Pfam SWIB/MDM2 domain 45 118 IPR003121 -
Bva08g01002 122 SUPERFAMILY SWIB/MDM2 domain 36 120 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g01002 Bva-Chr8 5117949 5119741 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Bva08g01002 SWIB 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g01002 - - gmx:100779127 143.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g01002 08 5117949 5119741 Bva08g01002 08 5117949 5119741 ECH