LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g00957	ATGTCCACTGTGAATAAAAAGCACGATGAAAGGTGGATGCATGATAACAATGGTTTATCTGGAGAAGATTATATCTTGGATGGTAAATTTGCTGGTGAAGAAAGTTTGAAGGACAATGCAGCATTTGATGCACTGAGTTCTTCACGTGGAAATAAGTTCATTAAACATGGTACTGATGTGATCAATAAGTCATCTGAAGGTGGGTCACTTTGTTACAGTCATGAGCTctgtaataatttaaagatcAACGGGAATATTCAAATGCCTTTTCTGAAGAGCTGCTCTAGACAAGGAAGTGTCCTGCATGAGAAGGTCTTGTTtgtaaatgatgaaaatgatgtCCTCAGTGATAGCTTTATGAGCAAGCAAAATTTGGGGGTGGATTGTGGCAGTGCTGAGGATTTACTTTCCCATACTCATCCCGAAgtcatcaaaaaatttaacatgtcTAGAGATTCTGATATTATCTCAAGAGCATTTGTTGCAGAAAATCTTTTCCTTTCAGATTCATGCTATTCAAAAACGGGAGGCTCTGGATCTGGTCATCAATTATTGGATTCAGAATGGTACTCTGTTTACCCTGAACCCTTATCCCTAGCCACTCCATGGGCTGTTGATCATATCTCTGATAACaatgatattaaaagaatGCCTAGATACCATAAAATGGATTCCTATATGAACCTtcttgatgatgaagaaaatgaatgcaaGTTCAGTTACAAGAGATCAAGAATCTCCAGCCAATACCACTGCTCCTCAAGTTTTGCTAACGTTGGATTTGATTTTGGCTGTCCTGCTGATCCTAGTAAAATATCCTATGGATTTGATGACCAGCCTGATTGcagtgatatatattttaccaaaTGGTCAGATATTTTGACTAACGAGTCAGATTGGTTGTGTCTAGAGTCAGATAGAGAAAAGTTCCAGAGACTTGGCAAGAACAGAGGCAGAAGGGATCATTTTGGACATTCAgcttttgaaaagaaaagtgctAGAAGAAGCTTTTCAGCTCCTCCGTTTTCTAGAAGGAAAAGACGGTTTGTTTCTTCTAATCAACCTTCAGAGTTTATAGCTAGAACACCTGCTGGTCAAACGTACAACCATGTCCTAAATTGTGAagAAGCTTATGATTTTAAGCATCCCAAACAATCTTCTGGTGCACTTCAGCTAAGCACCGAGGAGCAGTTATTGCCAAAAATCATACCTAATGTGAAAAAGAGACCAGAAATTGTTGCAGATACAGAGGTTAATACAATTAGAGAGTTtgacaattttcaaaatttcaacatcCAAAGTAGTACACCATTTGAAGATTCCATTGATTACAGTGCCAAATGGAGAAACTGCTCTGCTAAACTTCCAGAGAATGATAACATGCCTGATACACAAACTCAAAGTAATATACTTGACATCTCTTCTGGGTTCTTGCATCTTGCTGGTGATTCATTGATACCTGAAAGTATCTGTAAGAACTCCCTTGAGGATGCCAAAGTTCTCCATCAAGTGGATAAGAAATTCATTCCAATTGTGGCTGGCAGAACCCTTGCTATTATAGATCAGCATGCTGCCGATGAAAGAATCAGACTGGAAGAACTGCGTCAAAAGGTATTGTCTGGAGAAGCGAAGACAATAACCTATCTAGATGCTGAAAAAGAATTGGTGTTGCCGGAGATAGGCTATCAGCTACTGCATAATTATGCCGAACAGGTTAAAGATTGGGGCTGGATATGTAACATTCACACTCAAGATTCAAAGTCTTTTAAAAGGAATTTGGATATTCTCAACAGGCAGCCGATGGTTGTCATGCTTATTGCGGTACCCTGCATTTTAGGTGTCAAATTAAGTGATGTTGATCTTATGGAATTTCTTCAGCAGCTTGCTGACACGGAGGGATCATCAACAATGCCACCTTCTGTAATACGAGTCCTAAATATGAAGGCGTGCAGAGGTGCAATTATGTTTGGGGACTCTCTGCTGCCATCAGAATGTTCCCTTCTTGTTGAAGAGCTAAAGCATACATCGCTTTGTTTCCAATGTGCTCATGGACGGCCAACAACCGCTCCTTTAGTCAACTTGGAGGCGCTGTATAGTCAGATAGCCAAGTTCGGACTAACGAATGATTGCTCAAACGATGAGTGGCACGGGTTACGGAGGCATAAAGTCTGCGTTGAACGTGCAGCACAACGTTTATACTCTGCTTCTGCTGAAGCAGAATGTTG	2225	0.3798	MSTVNKKHDERWMHDNNGLSGEDYILDGKFAGEESLKDNAAFDALSSSRGNKFIKHGTDVINKSSEGGSLCYSHELCNNLKINGNIQMPFLKSCSRQGSVLHEKVLFVNDENDVLSDSFMSKQNLGVDCGSAEDLLSHTHPEVIKKFNMSRDSDIISRAFVAENLFLSDSCYSKTGGSGSGHQLLDSEWYSVYPEPLSLATPWAVDHISDNNDIKRMPRYHKMDSYMNLLDDEENECKFSYKRSRISSQYHCSSSFANVGFDFGCPADPSKISYGFDDQPDCSDIYFTKWSDILTNESDWLCLESDREKFQRLGKNRGRRDHFGHSAFEKKSARRSFSAPPFSRRKRRFVSSNQPSEFIARTPAGQTYNHVLNCEEAYDFKHPKQSSGALQLSTEEQLLPKIIPNVKKRPEIVADTEVNTIREFDNFQNFNIQSSTPFEDSIDYSAKWRNCSAKLPENDNMPDTQTQSNILDISSGFLHLAGDSLIPESICKNSLEDAKVLHQVDKKFIPIVAGRTLAIIDQHAADERIRLEELRQKVLSGEAKTITYLDAEKELVLPEIGYQLLHNYAEQVKDWGWICNIHTQDSKSFKRNLDILNRQPMVVMLIAVPCILGVKLSDVDLMEFLQQLADTEGSSTMPPSVIRVLNMKACRGAIMFGDSLLPSECSLLVEELKHTSLCFQCAHGRPTTAPLVNLEALYSQIAKFGLTNDCSNDEWHGLRRHKVCVERAAQRLYSASAEAEC	741

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g00957	741	Gene3D	-	544	655	IPR042121	-
	Bva08g00957	741	PANTHER	DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL	229	696	IPR038973	GO:0006298\|GO:0016887\|GO:0032300\|GO:0140664
	Bva08g00957	741	PANTHER	DNA MISMATCH REPAIR PROTEIN MLH3-RELATED	229	696	IPR028830	GO:0006298
	Bva08g00957	741	Pfam	MutL C terminal dimerisation domain	499	660	IPR014790	GO:0005524\|GO:0006298
	Bva08g00957	741	SMART	MutL_C_2	500	660	IPR014790	GO:0005524\|GO:0006298
	Bva08g00957	741	Gene3D	-	503	689	IPR042120	-
	Bva08g00957	741	SUPERFAMILY	DNA mismatch repair protein MutL	498	691	IPR037198	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g00957	K08739		-	gmx:100788019	825.469

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva08g00957	08	4863255	4868694	Bva08g00957	08	4863255	4868694	ECH