Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00952 ATGTACGGATCTAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCAGTGAGCAGTGGCGCAGGCAACTTTCAACCTTATGGATATACTGGTGGGTTCCAGCCCCCTCCTTTTCCTGTTGTCCGTCTCAGGGGGCTTCCCTTCAACTGCACCGATATTGACATCTTCAAGTTCTTTGCTGGGCTGGACATTGTGGATGTCTTGCTGGTCAACAAGAGTGGACGTTTTTCTGGAGAGGCCTTTGTTGTCTTTGCTGGAGCAATGCAGGTTGAGTTTGCTTTACAGAGAGACAGACAGAACATGGGGCGCAGATATGTGGAAGTCTTCAGATGTAAGAGGCAAGATTATTACAATGCTGTTGCCACTGAGGTAAATTATGAAGGAATATATGATAATGACTACCATGGAAGCCCTCCTCCATCTCGGTCCAAGAGGTTCAGTGATAAGGAGCAGATGGAATACTCTGAGATATTGAAGATGCGTGGACTGCCATATGCTGTGACGAAATCTGAAATTATTGAATTCTTCGGAGATTTCAAGCTGATAGAAGATAGGATACATATTGCATGTCGCCCAGATGGTAAAGCTACGGGGGAAGCATATGTGGAGTTTATCTCTGCTGAGGAGGCTAAGAGAGCAATGTGCAAAGATAAAATGACGATTGGGTCAAGGTATGTGGAGTTGTTTCCTTCAACACCTGATGAAGCTAGACGGGCAGAGTCAAGATCAAGGCAGTA 794 0.4647 MYGSRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGAGNFQPYGYTGGFQPPPFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVATEVNYEGIYDNDYHGSPPPSRSKRFSDKEQMEYSEILKMRGLPYAVTKSEIIEFFGDFKLIEDRIHIACRPDGKATGEAYVEFISAEEAKRAMCKDKMTIGSRYVELFPSTPDEARRAESRSRQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00952 264 CDD RRM_hnRNPH_ESRPs_RBM12_like 176 248 - -
Bva08g00952 264 SMART rrm1_1 176 248 IPR000504 GO:0003723
Bva08g00952 264 SMART rrm1_1 59 128 IPR000504 GO:0003723
Bva08g00952 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 123 IPR000504 GO:0003723
Bva08g00952 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 245 IPR000504 GO:0003723
Bva08g00952 264 Gene3D - 158 264 IPR012677 -
Bva08g00952 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 252 IPR000504 GO:0003723
Bva08g00952 264 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 1 264 - -
Bva08g00952 264 SUPERFAMILY RNA-binding domain, RBD 173 261 IPR035979 GO:0003676
Bva08g00952 264 CDD RRM_hnRNPH_ESRPs_RBM12_like 59 128 - -
Bva08g00952 264 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 264 - -
Bva08g00952 264 SUPERFAMILY RNA-binding domain, RBD 50 137 IPR035979 GO:0003676
Bva08g00952 264 Gene3D - 57 141 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00952 Bva-Chr8 4828576 4830183 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00952 K12898 - qsu:112005513 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00952 08 4828576 4830183 Bva08g00952 08 4828576 4830183 ECH