Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00885 ATGATGTTAGATGGAGCCGAAGACGAAGAGAAATTCCTTGCTGCCGGAATTGCTGGACTTCAGAAGAATGCTTTCTACATGCACCGTGCCTTGGACTCGAACAATCTCAGAGATGCTTTGAAGTTTTCAGCTCAGATGCTTTCTGAGCTTCGGACTTCGAAGCTTTCTCCTCACAAGTACTATGAACTATACATGCGCGTCTTTGATCAATTAAGGAAGCTAGAGATGTTTTTTGAGCAAGAGACTCGTCGTGGCTGCTCCATTATTGATCTTTATGAGCTTGTCCAGCATGCAGGCAACATTCTGCCGCGATTGTATCTTCTATGTACAGTAGGATCTGTATACATCAAGTCCAAGGAAGCTCCTGCTAAGGATGTGCTTAAGGACCTTGTGGAAATGTGTCGAGGCATTCAGCACCCTGTTCGTGGACTCTTTCTCAGAAGCTATCTTTCTCAAGTTAGTAGAGATAAATTGCCTGATATTGGTTCTGAGTATGAAGGGGATGCAGACACTGTGAATGATGCTGTAGAGTTTGTACTCCAAAATTTTACAGAAATGAACAAGCTTTGGGTACGAATGCAGCATCAGGGGCCTGCCTGGGACAAGGAGAAacgagagaaagaaaggagtgAGCTACGTGATCTAGTTGGGAAGAATCTTCATGTCCTCAGTCAGATAGAGGGTGTTGACCTTGATATGTACAAAGATGTCGTGCTTCCCAGAGTACTGGAACAGgtTGTAAATTGTAAAGATGAGCTAGCCCAATTCTACTTGATGGAGTGCATAATTCAAGTCTTTCCTGATGAGTATCACTTGCAGACCCTTGATGTATTGTTGGGTGCTTGCCCTCAGCTTCAGCCCTCTGTTGACATCAAGACAGTGCTTTCCCAATTAATGGAAAGGCTTTCAAACTATGCTGCTTCTAGTGCTGATGTGTTGCCTGAGTTCTTGCAAGTGGAAGCATTTTCTAAGTTAAGCAATGCCATTGGCAAgGTGATAGAAGCACAGCCTGACATGCCAACTGTTGGAGTTGTAACTTTATATTTGTCTCTTTTAACCTTCACTCTTCATGTCCACCCTGATCGACTTGATTATGCTGATCAAGTTCTGGGAGCATGCGTGAACAAACTCTCTGGCAAAGGGAAGATTGAGGACAATAGCGCAACTAAAAAAGTTGTTGCTCTTTTAAGTGCTCCACTAGAGAAATATAATGATATTGTGACTGCCTTGGAGCTTTCAAACTATCCTCGTGTCATGGAATATCTTGACAATCGAACAAATAAGGTCATGGCAACTGTTATTATTCAAAGCATTATGAAAAACAGAACTCGTATATCTACTTCAGACAAGGTTGAAGCATTGTTTGAACTGATAAAAGGGCTCATAAAGGATTTTGATGTGACTCTTAATGATGAGTtagatgaagatgaattcaAGGAGAAGCAGAATTCGGTTTCACGTCTAATTCAGATGCTATATAATGATGATCCAGTAGAAATGTTTAAGATTATAGACACTGTTTGGAAGCACATACTGACTGGAGGGCCAAAGCGTCTCCCTTTCACCATTCCAcctcttgttttctcttctctaaaGCTGGTCAGACAGTTGCAAGGTCAGGAAGAAAATCCTTTTGGAAAAGACGCATCAACAacaccaaagaaaatttttcagcTTTTGAATCAGACTATCGAGAGACTGTCAAGTGTCCCAGCACCTGAATTGGCATTACGGTTGTACTTGCAATGTGCTGAGGCTGCCAATGATTGTGATTTAGAACCTGTTGCATATGAATTTTTCACCCAAGCCTATATTCTGTATGAAGAGGAAATTGCTGATTCCAGAGCACAGATCACTGCACTCCATTTGATAATTGGAACTCTTCAAAGGATGCACGTCTTTGGTGTTGAGAACAGGGATACTTTAACTCACAAGGCCACAGGATACTCGGCAAGGCTTTTAAAGAAACCAGATCAGTGCAGAGCTGTGTATGCATGCTCACATCTATTTTGGGTTGATGACCAGGATAACATGAAAGATGGAGAGAGAGTCCTGATGTGCGTCAAGCGGGCTTTGAGAATTGCGAATGCCGCTCGGCAAATGGCAAATGCAGCACGAGGTAGCACTGGTTCAGTTATGCTCTTCATTGAGATTTTGAACAAGTACCTTTATTTCTTTGAGAAGGGAAACCCACAGGTCACCGTTGCTCCTATCCAGGGCCTAATCGAGTTAATCATGACTGAAATGCAAAGTGACACGATAACTCCAGATCCAGTTGCGGATGCTTTCTTGGCTAGGACCTTGCGTTACATACAATTCCAGAAACAGAAAGGTGGCACTGTGGGGGACAAGTATGAGCCCATAAAGGTTTG 2372 0.4136 MMLDGAEDEEKFLAAGIAGLQKNAFYMHRALDSNNLRDALKFSAQMLSELRTSKLSPHKYYELYMRVFDQLRKLEMFFEQETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVNDAVEFVLQNFTEMNKLWVRMQHQGPAWDKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKDVVLPRVLEQVVNCKDELAQFYLMECIIQVFPDEYHLQTLDVLLGACPQLQPSVDIKTVLSQLMERLSNYAASSADVLPEFLQVEAFSKLSNAIGKVIEAQPDMPTVGVVTLYLSLLTFTLHVHPDRLDYADQVLGACVNKLSGKGKIEDNSATKKVVALLSAPLEKYNDIVTALELSNYPRVMEYLDNRTNKVMATVIIQSIMKNRTRISTSDKVEALFELIKGLIKDFDVTLNDELDEDEFKEKQNSVSRLIQMLYNDDPVEMFKIIDTVWKHILTGGPKRLPFTIPPLVFSSLKLVRQLQGQEENPFGKDASTTPKKIFQLLNQTIERLSSVPAPELALRLYLQCAEAANDCDLEPVAYEFFTQAYILYEEEIADSRAQITALHLIIGTLQRMHVFGVENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDNMKDGERVLMCVKRALRIANAARQMANAARGSTGSVMLFIEILNKYLYFFEKGNPQVTVAPIQGLIELIMTEMQSDTITPDPVADAFLARTLRYIQFQKQKGGTVGDKYEPIKV 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00885 790 PIRSF Retromer_Vps35 2 318 IPR005378 GO:0015031|GO:0030906|GO:0042147
Bva08g00885 790 PIRSF Retromer_Vps35 314 789 IPR005378 GO:0015031|GO:0030906|GO:0042147
Bva08g00885 790 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 790 - -
Bva08g00885 790 PANTHER VACUOLAR SORTING PROTEIN 35 2 790 IPR005378 GO:0015031|GO:0030906|GO:0042147
Bva08g00885 790 Gene3D - 466 775 IPR042491 -
Bva08g00885 790 Pfam Vacuolar protein sorting-associated protein 35 13 747 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00885 Bva-Chr8 4530815 4538864 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00885 K18468 - gmx:100809289 1426.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00885 08 4530815 4538864 Bva08g00885 08 4530815 4538864 ECH