Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00878 ATGTTGCAAGACATGTGGACTGCTCCTCCTGGTTTCAGACCCACCAAGTCTGCTCCTTCTTCACCCGCAAAGCCTCTTGCGGTATGCAGAACTCGATCGGAATCCTTCCACGTGACCCACAAGGTCCCTGTTGGCGATACTCCTTACGTCAGAGCCAAAAACGTTCAGttGGTTGATAAGGACCCAGAAAGAGCAATTCCACTGTTTTGGGCAGCCATCAACGCTGGAGACCGAGTGGATAGTGCTTTAAAAGACATGGCAATTGTAATGAAGCAGCAGAATCGAGCTGAAGAAGCCATTGAAGCCGTTAAATCACTCCGACATAAATGTTCTGATCAATCCCAAGAATCTCTTGATAATATCCTTTTGGATCTTTACAAGAGATGTGGAAGGTTGGATGACCAAACAGCCCTTTTGAAGCACAAGTTGTTCTTGATTCAACAAGGGTTGGCTTTCAATGGTAAACGAACTAAGACTGCTAGATCTCAAGGAAAGAAGTTTCAGGTTTCTGTGGAGCAAGAGGCTACTAGATTACTGGGAAATTTGGGATGGGCACTGATGCAGCAAAATAACTACATCGAAGCAGAAGATGCTTATCGTAGAGCACTCTCAATTGCACCAGACAATAACAAGATGTGCAATCTAGGCATTTGCTTGATGAAACAAGGGAGAATTTCAGAGGCTAAAGAGACTCTGTCTAGAGTAAAGCCTGCAATTGCAGATGGCCCAAGAGGCTCAGATTCTCATCTGAAAGCCTATGAAAGGGCACAGCAAATGCTCAAGGACCTTGAGTCTGAAAGGCTGAACAAGGGAGGGGATAGGCTTGAACAGAGCAGGCTCTTTGAAGCTTTTCTGGGTTCTTCATCAATCTGGCAACCTCAGCCTTGCAAGGACCATGTCATGCCAACAACGAATTCAATCAAAATCCAAGATAGTTTTGCTGATGAGAACATTAACTTGAATATATTAGCAAATCGTACAGCGCCCCAGATGAAAGTGGACAATAAAGTTGCTGTTGCTGCCCAATTTAGGAACTCACTTAATGTCGCGGCTCCACCATTTTATTCATCCAAAACATTGAAGGAACCTGTAATGAGAGAACCACTCGGTAATCACTTGCCTGAGAGCCTAAAGAGAACCAGGTCTGGAAATGCTGCTGGTTCAATGAGAATGAATGATCCGGAGGAGTTAAAGCTGCCAGTGGAATCAGGGGTGCCAGAGAACAAGACGAGAAGACTTTCTTCAGAGGAGGATACAGGGAACAAGTTAGTAGATCTTTTGCCTGACAACAAGGAATTTGAAGAAGCTATTCTTGCCGCGATTTTGGGGCCAGAAAATGATACAGAGAAAGCCATTGACGCAAACAACACCTCGGGAATCTTacagaagaaaattgataagagGCTTAAGGTTTTTCAAGATATTACATTATCTTTGAGCCCCAGGGCATA 1451 0.4383 MLQDMWTAPPGFRPTKSAPSSPAKPLAVCRTRSESFHVTHKVPVGDTPYVRAKNVQLVDKDPERAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAVKSLRHKCSDQSQESLDNILLDLYKRCGRLDDQTALLKHKLFLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRISEAKETLSRVKPAIADGPRGSDSHLKAYERAQQMLKDLESERLNKGGDRLEQSRLFEAFLGSSSIWQPQPCKDHVMPTTNSIKIQDSFADENINLNILANRTAPQMKVDNKVAVAAQFRNSLNVAAPPFYSSKTLKEPVMREPLGNHLPESLKRTRSGNAAGSMRMNDPEELKLPVESGVPENKTRRLSSEEDTGNKLVDLLPDNKEFEEAILAAILGPENDTEKAIDANNTSGILQKKIDKRLKVFQDITLSLSPRA 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00878 483 Coils Coil 246 266 - -
Bva08g00878 483 MobiDBLite consensus disorder prediction 1 24 - -
Bva08g00878 483 MobiDBLite consensus disorder prediction 368 394 - -
Bva08g00878 483 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 480 IPR044961 -
Bva08g00878 483 Pfam Tetratricopeptide repeat 186 244 - -
Bva08g00878 483 Gene3D Tetratricopeptide repeat domain 54 244 IPR011990 GO:0005515
Bva08g00878 483 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Bva08g00878 483 SUPERFAMILY TPR-like 57 283 IPR011990 GO:0005515
Bva08g00878 483 SMART tpr_5 176 209 IPR019734 GO:0005515
Bva08g00878 483 Coils Coil 89 116 - -
Bva08g00878 483 PANTHER PROTEIN POLLENLESS 3-LIKE 2 5 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00878 Bva-Chr8 4504620 4506661 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00878 - - qsu:112035432 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00878 08 4504620 4506661 Bva08g00878 08 4504620 4506661 ECH