Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00690 ATGGCAGCCGAGAAAATTCTGAAAGCAAGCAAGTGGTTCTCCAATAAAGGCCTGAGGCTGAGTCTTCATCGTCGAAGATCAAGGTCAACAAGATCGTCCAACTCAACGCCGAGCCCTGATCCCATGTCACCCAAATATAGGAGAAGAGAGGAGGAGCTGAAAGAGGTTTTCCGTCATTTCGATGAAAACGGTGATGGGAAAGTCTCGGCGTTAGAGCTAAGGTCCTATTTTGGATCTATTGGAGAGTACTTGTCACACGAAGAGGCTCAAGGGGTGATCTGTGACCTCGATTCAGATGGGGACAATTTATTGgattttcaagattttatgAGGCTGATGAAGAGAGAAGGCGATGAGCATGAGGATCTGAAAAAAGCTTTTGAGATGTTTGTGTGGGAAAAAGGGTCTGCCTGCATAACCCCGAAAGGGCTGCAGCAGATGTTGCACCGCCTCGGAGATAACAAGTCTTACGATGAGTGTGCGGCCATGATTGATGCCTTTGATGTCGATCACAACGGCTTCCTTGATTTCAATGAGTTTCACCAAATGATGGCTGCTta 560 0.4589 MAAEKILKASKWFSNKGLRLSLHRRRSRSTRSSNSTPSPDPMSPKYRRREEELKEVFRHFDENGDGKVSALELRSYFGSIGEYLSHEEAQGVICDLDSDGDNLLDFQDFMRLMKREGDEHEDLKKAFEMFVWEKGSACITPKGLQQMLHRLGDNKSYDECAAMIDAFDVDHNGFLDFNEFHQMMAA 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00690 186 SUPERFAMILY EF-hand 48 185 IPR011992 -
Bva08g00690 186 Pfam EF-hand domain pair 136 185 IPR002048 GO:0005509
Bva08g00690 186 CDD EFh 52 114 IPR002048 GO:0005509
Bva08g00690 186 ProSiteProfiles EF-hand calcium-binding domain profile. 155 186 IPR002048 GO:0005509
Bva08g00690 186 PANTHER CALCIUM BINDING PROTEIN 16 185 - -
Bva08g00690 186 MobiDBLite consensus disorder prediction 22 47 - -
Bva08g00690 186 Pfam EF-hand domain pair 50 114 IPR002048 GO:0005509
Bva08g00690 186 Gene3D - 38 118 - -
Bva08g00690 186 ProSitePatterns EF-hand calcium-binding domain. 61 73 IPR018247 -
Bva08g00690 186 ProSitePatterns EF-hand calcium-binding domain. 168 180 IPR018247 -
Bva08g00690 186 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Bva08g00690 186 SMART efh_1 159 186 IPR002048 GO:0005509
Bva08g00690 186 SMART efh_1 88 116 IPR002048 GO:0005509
Bva08g00690 186 SMART efh_1 52 80 IPR002048 GO:0005509
Bva08g00690 186 PANTHER CALCIUM-BINDING PROTEIN CML41-RELATED 16 185 - -
Bva08g00690 186 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Bva08g00690 186 CDD EFh 122 185 IPR002048 GO:0005509
Bva08g00690 186 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Bva08g00690 186 Gene3D - 119 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00690 Bva-Chr8 3568111 3568961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00690 1 186 EF-hand Containing Proteins AT3G50770 50.732 9.70e-63 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00690 K13448 - gmx:100306370 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00690 08 3568111 3568961 Bva08g00690 08 3568111 3568961 ECH