Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00416 ATGCCCGCCTCTTATTTCAGACGCTTTCATcttacttctttttcaaaaaactgTTTTGATCTTCAATATTGTGGCAACCATTCTCGATCCTTCATAgctcatttttcattttctagaaaaaatgAGCCAAAATCCAATCTGGATGAGTCTCAACTCCTTCATTATCTATCCAAACGATGGCATCAGGAAGCACGAAGCCTTCTTGAGAAATTTTCTGATGGAGACCATCATGGCCGTGTTGTTTATTGGACTTCGTTGCTCACAAAGTACTCGCGTAAAGGCTATGTCAACGAATCCCGGGTACTCTTTGACATTATGCCCTACAGAAATCTCGTCTCTTATAATGCAATGTTATCAGGATATTTACAATCCGGAAGGCTGGTTGAGGCTTGTCAGTTTTTTGAAAAGATGCCAGATAGGAATGTTGTTTCGTGGACTGTGATGCTTTGTGGATTAGCAGATGCGGGCCGGATTGAAGATGCAAAGAAATTGTTCGATGAAATGCCGGAGAAGAATGTTGTTTCCTGGAATTCATTGGTTTCTGGGCTGATTAAGAATGGAAATTTGGAGGAAGCAAGGCAGGTTTTTGACCAAATTCCAGGtaaaaatatagtttcttGGAATGCTATGATTGCAGGTTATGCTGAAGATTTTAGAATGGAAGAAGCAAGAATTTTGTTCGACGAGATGAATTGTAGGAATGTAATTACTTGGACTAGCATGATATCTGGTTACTGCAGGGCAGGCTATGTACAAGAGGCCTATTGTTTATTCCAGAGAATGCCAGACAAAAATGTTGTTTCTTGGACAGCCATGATCGGTGGCTTCACTTGGAACCGGTTATATGAAGAGGCATTGCtgctttttcttaaaataagattttctgATGTAAAACCGAATGGGGAAacctttatttctctttcctaTGCATGTGCTGGTTTGGGTTTTCCTTGTCTTGCCAAGCAATTACATGCTCAGCTGATAATTAACAACTGGGAGCAGGATGATTATGACGGCAGGTTATGTAAAAGTCTCATTCACATGTATTCTGTGCTAGGTCTCATGGATTTTGCACACAATATCTTTCAAAAGAACCTCGCTTACTGTGACAATCAGTCTTTCAATTCCATGATCAACGGTTATATTGAGGTTGGTCAGTTAGAAAAGGCTCAAGATTTGTTTCAAAAAGCACCCAGTCAAGACATAATCGCATGTACTTCCATGATCGTTGGCTACTTTAACGATGGCCAAGTAATAAAAGCATGCGATCTATTTGAGAAGATGCCTGACAGGGATGCCATTGCATGGACGACAATGATTTCAGGGCATGTCCAAAATGAGCTTTTCGCTGAAGCAATCTGTTTGTTTTCAGAAATGCGGGCTCAGGGCGTTTCTCCTATAAATTCTACCTATTCTGTTCTTTTTGGAGCCATAGGTGCGATGGCATACCTTGATCAGGGGCGGCAGTTACATGGCATGAAGTTGAAGACACTACatgaatatgatttgattcttgagaacTCTCTAATTTCAATGTACGCAAAATGTGGGGAGATAGATGACGCACTTCGCATATTCTCTGACATGACTCACCGGGACATAATTTCCTGGAACTCCATGATCATGGGCCTTTCATACCATGGGAGAGCCATCGAAACTTTAAAGGTGTATGAAACTATGCTCGATTACGGGACCTACCCAAATTCTGTTACTTTCCTAGGTGTCCTGACAGCATGTAGTCATGCAGGGCTTGTTGATAAAGCGTGCGAGTTATTTGATGCAATGAGTAACGCTTATGCACTTCAACCTGGCGTGGAACACTACATTTGTATGATCAATCTTCTGGGCCGAGCAGGAAAGGTGAAGTATGCAGAGGAGCTTGTCTCAAGTCTACCTTTTGAGCCAAATCATGCTGTTTGGGGGGCATTGCTTGGGGTATGTGGGCTTAGTGAAACAAATGCAGATGTTGCTAGGCGTGCAGCCAAACGACTCCTTGAGATGGATCCTTTAAATGCACCAGGCCATGTCGTTCTCTGTAACATATATGCAGCAAATGGTTGGCACgttgaagaaacaaaattgagaaaagaaatggggTTGAAAGGTGTAAGGAAGACACCTGGATGTAGTTGGATATTGGTGAAGGGAAGAGTTCATATGTTCGTATCAGGAGATAGATTATACCCACAAGTGCGAGACactttatttctattatttgggattaatgcagaaaaata 2237 0.3894 MPASYFRRFHLTSFSKNCFDLQYCGNHSRSFIAHFSFSRKNEPKSNLDESQLLHYLSKRWHQEARSLLEKFSDGDHHGRVVYWTSLLTKYSRKGYVNESRVLFDIMPYRNLVSYNAMLSGYLQSGRLVEACQFFEKMPDRNVVSWTVMLCGLADAGRIEDAKKLFDEMPEKNVVSWNSLVSGLIKNGNLEEARQVFDQIPGKNIVSWNAMIAGYAEDFRMEEARILFDEMNCRNVITWTSMISGYCRAGYVQEAYCLFQRMPDKNVVSWTAMIGGFTWNRLYEEALLLFLKIRFSDVKPNGETFISLSYACAGLGFPCLAKQLHAQLIINNWEQDDYDGRLCKSLIHMYSVLGLMDFAHNIFQKNLAYCDNQSFNSMINGYIEVGQLEKAQDLFQKAPSQDIIACTSMIVGYFNDGQVIKACDLFEKMPDRDAIAWTTMISGHVQNELFAEAICLFSEMRAQGVSPINSTYSVLFGAIGAMAYLDQGRQLHGMKLKTLHEYDLILENSLISMYAKCGEIDDALRIFSDMTHRDIISWNSMIMGLSYHGRAIETLKVYETMLDYGTYPNSVTFLGVLTACSHAGLVDKACELFDAMSNAYALQPGVEHYICMINLLGRAGKVKYAEELVSSLPFEPNHAVWGALLGVCGLSETNADVARRAAKRLLEMDPLNAPGHVVLCNIYAANGWHVEETKLRKEMGLKGVRKTPGCSWILVKGRVHMFVSGDRLYPQVRDTLFLLFGINAEK 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00416 745 Pfam PPR repeat 83 109 IPR002885 -
Bva08g00416 745 Pfam PPR repeat 267 293 IPR002885 -
Bva08g00416 745 Pfam PPR repeat 608 628 IPR002885 -
Bva08g00416 745 Pfam PPR repeat 143 173 IPR002885 -
Bva08g00416 745 Pfam PPR repeat 236 266 IPR002885 -
Bva08g00416 745 Pfam PPR repeat 373 396 IPR002885 -
Bva08g00416 745 Pfam PPR repeat 404 431 IPR002885 -
Bva08g00416 745 TIGRFAM PPR: pentatricopeptide repeat domain 236 267 IPR002885 -
Bva08g00416 745 TIGRFAM PPR: pentatricopeptide repeat domain 435 466 IPR002885 -
Bva08g00416 745 TIGRFAM PPR: pentatricopeptide repeat domain 143 174 IPR002885 -
Bva08g00416 745 TIGRFAM PPR: pentatricopeptide repeat domain 112 143 IPR002885 -
Bva08g00416 745 TIGRFAM PPR: pentatricopeptide repeat domain 535 568 IPR002885 -
Bva08g00416 745 TIGRFAM PPR: pentatricopeptide repeat domain 507 534 IPR002885 -
Bva08g00416 745 TIGRFAM PPR: pentatricopeptide repeat domain 404 431 IPR002885 -
Bva08g00416 745 TIGRFAM PPR: pentatricopeptide repeat domain 373 401 IPR002885 -
Bva08g00416 745 TIGRFAM PPR: pentatricopeptide repeat domain 174 204 IPR002885 -
Bva08g00416 745 TIGRFAM PPR: pentatricopeptide repeat domain 205 232 IPR002885 -
Bva08g00416 745 PANTHER - 111 298 - -
Bva08g00416 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Bva08g00416 745 Pfam E motif 653 712 IPR046848 -
Bva08g00416 745 Gene3D Tetratricopeptide repeat domain 184 277 IPR011990 GO:0005515
Bva08g00416 745 Gene3D Tetratricopeptide repeat domain 44 183 IPR011990 GO:0005515
Bva08g00416 745 PANTHER OS01G0913400 PROTEIN-RELATED 400 733 - -
Bva08g00416 745 PANTHER OS01G0913400 PROTEIN-RELATED 320 397 - -
Bva08g00416 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Bva08g00416 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Bva08g00416 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 532 IPR002885 -
Bva08g00416 745 PANTHER OS01G0913400 PROTEIN-RELATED 62 114 - -
Bva08g00416 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Bva08g00416 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Bva08g00416 745 PANTHER - 400 733 - -
Bva08g00416 745 PANTHER - 320 397 - -
Bva08g00416 745 Pfam PPR repeat family 110 142 IPR002885 -
Bva08g00416 745 Pfam PPR repeat family 432 477 IPR002885 -
Bva08g00416 745 Pfam PPR repeat family 533 580 IPR002885 -
Bva08g00416 745 Pfam PPR repeat family 202 235 IPR002885 -
Bva08g00416 745 SUPERFAMILY TPR-like 150 685 IPR011990 GO:0005515
Bva08g00416 745 SUPERFAMILY TPR-like 35 198 IPR011990 GO:0005515
Bva08g00416 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Bva08g00416 745 PANTHER OS01G0913400 PROTEIN-RELATED 111 298 - -
Bva08g00416 745 PANTHER - 62 114 - -
Bva08g00416 745 Gene3D Tetratricopeptide repeat domain 498 723 IPR011990 GO:0005515
Bva08g00416 745 Gene3D Tetratricopeptide repeat domain 279 399 IPR011990 GO:0005515
Bva08g00416 745 Gene3D Tetratricopeptide repeat domain 400 497 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00416 Bva-Chr8 2147729 2150553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00416 81 735 Glycoside Hydrolase AT3G49170 28.611 1.61e-84 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00416 - - qsu:111997915 1019.61