Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00407 ATGGACTCGCAACAGGGCAATCTATTCGAAACCGCCTCGCAACCTGATACCGGTAACGACGCCTACACTTTTCTTGAATTTAACACACAGGGGGAGGATTTCGACTACCCGGAGTTCCGTGACCCGATTAGGTCAACATGGCCTACTCCGTCCGATTCACTGTCTGAACCAACCGAACGTGGTGGTGGAGCTGGTGCTGGGTCTGGGTCTGATCACCATTCCGACGCCTCACCCGTTTCTGCAGCACCGGGAAGTGCCGCTAAAAGCCGGGCAGCTGGGTCGGGTGGCAGCAGCGGCAACAGCCAGATGGTGGACGCCCTGGCGGCTGGGATGAGCGgcttaaattttgaagatacTGCGGATGATGAGAATTACGAGTACGGTAAAGGAGATTTCACAGAACATGCATGCCGGTATTGTGGGGTGTCGAACCCAGCATGTGTTGTGAGGTGTAATGTACCATCGTGTCGCAAATGGTTCTGCAATTCCAGGGGGAACACATCGGGTTCACATATTGTAAATCACCTGGTTCGAGCAAAACATAAAGAAGTCTGTCTTCACAAAGATAGTCCTTTAGGAGAAACAATCCTTGAATGCTACAACTGTGGGTGTCGTAATGTGTTTCTCCTTGGATTTATTTCTGCTAAGACAGAGAGTGTGGTTGTTCTTCTTTGTCGTGAGCCTTGCTTGAGTGTTAATGCATTGAAGGACATGAATTGGGACCTCAGCCAATGGTGTCCACTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAgATCCCATCTGAACAGGAACAGTTGAGAGCGCGTCAGATAAGTGCgcagcaaataaataaagtagaaGAGCTATGGAAGACAAATCCTGATGCTACTCTCGAGGATCTTGAGAAGCCTGGCATGGATGATGAACCTCAGCCTGTGGCTTTGAAATATGAGGATGCATATCAGTATCAAAATGTGTTTGCACCACTTATTAAGCTTGAAGCTGATTATGATAAGATGACGAAAGAATCACAAAGCAAGGATAATGTTACAATCCGATGGGATATTGGGCTTAATAAGAAGCGCATTGCATATTTTGTCTTCCCAAAGgAAGATAATGAGTTGCGGCTTGTACCTGGTGATGAACTACGATTGCGTTATTCTGGAGATGCTGCACATCCAGCATGGCAGTCAGTGGGGCATGTGATAAAGCTAACTGCACAAGAGGAGGTTGCACTTGAGCTCCGTGCTAGTCAGGGTGTACCAGTTGATGTAAACCATGGTTTGAGTGTCGATTTTGTATGGAAGAGTACAGGCTTTGACAGGATGCAAGGAGCTATGAAGACCTTTGCTGTCGATGAGACAAGTGTTAGTGGGTATATTTACCATCACTTGTTGGGTCATGAAGTTGAGGTTCAGATGGTGCGAAATACATTGCCACGACGCTTTGGTGCCCCTGGACTTCCAGAGCTCAATGCATCCCAAGTTTTTGCAGTTAAGAGTGTTCTTCAGAGACCAATTAGTCTGATTCAAGGTCCTCCTGGAACCGGTAAGACTGTAACTTCTGCAGCAATTGTATATCACATGGCAAAACAAGGTCAGGGACaggtTTTGGTTTGTGCCCCTAGTAATGTGGCTGTGGACCAGCTAGCTGAAAAGATTAGTGCTACTGGGTTAAAGGTTGTTAGGCTTTGTGCAAAATCAAGGGAAGCTGTTAGTTCTCCTGTTGAGCATTTAACGCTTCATTATCAGGTTCGACATCTTGACACATCTGACAAAAGTGAACTTCACAAGTTACAACAGCTGAAAGACGATCAAGgGGAACTTTCCAGTAGTGATGAGAAGAAGTATAAAGCACTAAAGCGAGCAACAGAGAGGGAGATTTCACAGAGTGCTGATGTGATCTGCTGCACTTGTGTTGGTGCTGGGGATCCTCGCCTAGCTAACTTTAGGTTCCGTCAGGTACTTATTGATGAGTCCACTCAAGCAACAGAGCCTGAATGTCTCATTCCCTTGGTTCTTGGGGCCAAGCAGGTTGTCCTTGTTGGTGACCATTGCCAGCTTGGTCCTGTTATCACTTGCAAGAAAGCAGCTCGTGCAGGTCTAGCACAATCACTTTTTGAACGCCTTGTTCTACTTGGTGTCAAACCAATTAGATTGCAGGTTCAATACCGGATGCATCCATCTCTTTCAGAATTTCCCTCAAACAGCTTTTATGAAGGCACCCTACAAAATGGAGTCACTGTTAATGAAAGGCAATTATCAGGAATTGATTTTCCCTGGCCTGTGCCAAACCGTCCCATGTTTTTTTATGTCCAGATGGGTCAAGAAGAGATCAGTGCAAGCGGAACATCTTATTTAAATAGGACTGAGGCTGCAAACGTTGAAAAGATTGTGACAACTTTCTTAAGGAGTGGTGTAGTCCCTAGTCAGATTGGCGTGATAACACCTTATGAAGGACAGAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTTCTCTTAGGCAGCAACTTTACAAGGAGATTGAGgTTGCAAGTGTTGATTCCTTTCAAGGAAGGGAGAAagattacattattttatcgTGTGTTAGAAGTAATGAGCATCAGGGCATTGGATTTCTAAATGATCCTCGAAGGCTTAATGTTGCGTTGACACGAGCTAGATATGGTATTGTTATTCTGGGCAATCCTAAAGTTCTCAGTAAACAGCCTCTTTGGAACAGTTTATTGACGCACTATAAGGAAAACGAATGCTTGGTTGAAGGGCCATTGAATAACTTGAAGCAGAGTATGGTTCAGTTTCAGAAACCTAAGAAGATCTACAATGATAGAAGGCTTTTTTATGGTGGTGGACCTGGAGTTGTGCCTAATGATAATTCAGGCTCTGGCCCAACATCAGATCGGAGTATCCGCCGTGGAAGAGGATCTTATATACCTCCTGGCCCACCAAATGGAACCCATAAGCCTGGAGTGCATCCTCCTGGGTATGCAATGCCAAGAGTTCCCCTGCCACCTTTCCACGGTGGTCCCCAGTCTCAGCCATATGCCATTCCAACTCGTGGAGCTGTTCATGGACCTGTGGGGGCAGTTCCTCATGTCCCACCTCCAGGGAGTCGGGGTTTTGGGGCTGGGCGAGGTAATTCAGGTGCCCCAATCGGCAGCAATAATCTTCCACCCCAGCAAGGCACACAGCAGTCTATTGGGAATCTTGGATCTGCCTTTAACTTCCCAGCTCTTGAAAATCCCAACAGCCAGCCATCTGTTGGTGGTCCATTGTCTCAACCTGGATTTGCGAATAATATGTCTGTCCAAGGGTCGAGCCAATCATTCCGAGATCAATTTTCTGTGGCAGGAATGTCCCAGGATTTCTTGGGTGATGACTTCAAAAGTCAGGGATCTCATGTTCCTTATAATGTTACTGATTTCTCCACACAGGCTTCTCAAAGTGGATATGCTCTTGATTATGTTACTCAAGGAGCACAAGGTGGATTTCCAGGGAGCTTTCTGAACCAGAATTCTCAGGCTGGATATTCACGTTTTGGTTCTGGAAATGATTTTATGTCTCAGGACTATATGACTCATGGATCACAAGGTCTTTTCACTCAGGTTGGCTTCAACGATCCCTCACAAGACGATGCATCGCAGAGCCATTTTGGCTTGGCTAATGCCAACCCTCTTCAGTCTCAGGGCCTGATGAATCCTCTCTACTCCCAGCCTTTTGCTCATTACAATACACAGCAGATGAACTTGCAGGCTTCCCAACAGCAGCCTCAGGGTCAGAGTTCTCAGAATCAGAAAATCCATTA 3794 0.4541 MDSQQGNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSTWPTPSDSLSEPTERGGGAGAGSGSDHHSDASPVSAAPGSAAKSRAAGSGGSSGNSQMVDALAAGMSGLNFEDTADDENYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGMDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMTKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGLSVDFVWKSTGFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDDQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVITCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQLSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKENECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFYGGGPGVVPNDNSGSGPTSDRSIRRGRGSYIPPGPPNGTHKPGVHPPGYAMPRVPLPPFHGGPQSQPYAIPTRGAVHGPVGAVPHVPPPGSRGFGAGRGNSGAPIGSNNLPPQQGTQQSIGNLGSAFNFPALENPNSQPSVGGPLSQPGFANNMSVQGSSQSFRDQFSVAGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYALDYVTQGAQGGFPGSFLNQNSQAGYSRFGSGNDFMSQDYMTHGSQGLFTQVGFNDPSQDDASQSHFGLANANPLQSQGLMNPLYSQPFAHYNTQQMNLQASQQQPQGQSSQNQKIH 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00407 1264 MobiDBLite consensus disorder prediction 978 1007 - -
Bva08g00407 1264 Pfam AAA domain 698 893 IPR041679 -
Bva08g00407 1264 MobiDBLite consensus disorder prediction 1 99 - -
Bva08g00407 1264 CDD DEXXQc_UPF1 485 720 - -
Bva08g00407 1264 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 494 626 IPR014001 -
Bva08g00407 1264 MobiDBLite consensus disorder prediction 1027 1101 - -
Bva08g00407 1264 Pfam RNA helicase UPF1, 1B domain 340 429 IPR040812 -
Bva08g00407 1264 Gene3D - 449 719 IPR027417 -
Bva08g00407 1264 CDD 1B_UPF1-like 341 428 IPR040812 -
Bva08g00407 1264 Gene3D - 571 623 - -
Bva08g00407 1264 MobiDBLite consensus disorder prediction 1245 1264 - -
Bva08g00407 1264 Pfam AAA domain 587 687 IPR041677 GO:0004386
Bva08g00407 1264 PANTHER DNA2/NAM7 HELICASE FAMILY 111 1029 IPR045055 -
Bva08g00407 1264 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 111 1029 - -
Bva08g00407 1264 MobiDBLite consensus disorder prediction 1 26 - -
Bva08g00407 1264 CDD SF1_C_Upf1 721 910 IPR041679 -
Bva08g00407 1264 Gene3D - 341 429 - -
Bva08g00407 1264 CDD ZBD_UPF1-like 136 258 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Bva08g00407 1264 Pfam Type III restriction enzyme, res subunit 491 553 IPR006935 GO:0003677|GO:0005524|GO:0016787
Bva08g00407 1264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 916 IPR027417 -
Bva08g00407 1264 MobiDBLite consensus disorder prediction 947 1014 - -
Bva08g00407 1264 Pfam RNA helicase (UPF2 interacting domain) 135 288 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Bva08g00407 1264 MobiDBLite consensus disorder prediction 1045 1101 - -
Bva08g00407 1264 Gene3D - 720 931 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00407 Bva-Chr8 2110621 2122228 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00407 K14326 - qlo:115972376 2331.21