Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00398 ATGCAAGAAGCGCATCTAACGCGTGAGAATAGCAACTTGAACTCTGAAGCAAGAAGAAACGAGAAATGGGAGAAGCTGCATGGGCCAACGGTTTCtcataataatcaaaatgatTCGAAGAGGGTGCCTGTGTTTGTGATGCTGCCATTAGACACAGTAACAACGGGTGGGAATTTGAATAAGCCACGAGCAATGAATGCTAGTTTGATGGCACTCAAGAGTGCAGGAGTTGAGGGAGTAATGGTAGATGCTTGGTGGGGTTTGGTGGAGAAAGACGGACCTCTTAAATACAACTGGGAAGCCTATTCTGAGCTTGTGAACATGGTACAGAAACATGGCTTGAAGCTTCAAGTTGTTATGTCTTTCCATCAGTGTGGAGGAAATGTTGGAGATTCTTGCAGCATTCCTTTACCGCCATGGGTGCTTGAAGAAATCAGTAAGAACCCAGACTTAGTTTACACAGACAGATCAGGGAGAAGGAATCCTGAGTACATCTCCTTGGGTTGTGATTCATTGCCTGTTCTCAGAGGAAGGACGCCCATTCAAGTCTACTCTGATTATATGAGAAGCTTCCGTGACAGGTTCAGAGACTACTTGGGCACTGTTATAGTCGAAATTCAATTGGGGATGGGTCCTTGTGGAGAACTTAGATATCCATCTTATCCGGAGAGCAACGGAACTTGGAGGTTTCCTGGAATTGGCGAATTCCAGTGCTATGACAAGTATATGAGAGCATCACTGGAAGCGTCAGCAGATGCGATTGGCAAGAGAGATTGGGGAAGAAATGGACCCCATGATTCGGGTAAACTACTGGAACACGGTGAGAAGATCCTTGCATCTGCCAAAGGAATTTTCCAAACATCTGGGGTGAAACTATCAGCGAAAATTGCTGGAATCCACTGGCATTACAGAACAAGATCACACGCTGCTGAATTAACTGCTGGATACTATAATACAAGATTTCGTGATGGTTACATGCCAATAGCACAAATGCTAGCAAAACATGGAGttgtcttcaatttcactTGCATGGAAATGAAAGACGGAGAGCAGCCTGATCATGCCAACTGCTCACCCGAAGGCTTAGTTCGTCAAGTAAAGAGGGCAACCAGGGCAGCTGGGGCAGAACTTGCTGGGGAGAACGCATTGGAGAGATATGATTCAGATGCGTATGCTCAAGTTTTGGCAACAAGCAGGTCAGACTCTGGTAATGGATTGTGTGCATTTACATATTTAAGAATGAACAAGAAGTTGTTCGAAGGTGATAATTGGAGACACCTAGTGGACTTCGTTAGAAACATGTCTGAAGGTGGACGCAGACAAAGACTACCAGACTCTGATTCCCAGGGGACTGATCTTTACGTTGGACACATCACagggaaagagaagaagaagaaagatcaaaagcTTGCTCTTGTGTG 1421 0.4349 MQEAHLTRENSNLNSEARRNEKWEKLHGPTVSHNNQNDSKRVPVFVMLPLDTVTTGGNLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEAYSELVNMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRDRFRDYLGTVIVEIQLGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASADAIGKRDWGRNGPHDSGKLLEHGEKILASAKGIFQTSGVKLSAKIAGIHWHYRTRSHAAELTAGYYNTRFRDGYMPIAQMLAKHGVVFNFTCMEMKDGEQPDHANCSPEGLVRQVKRATRAAGAELAGENALERYDSDAYAQVLATSRSDSGNGLCAFTYLRMNKKLFEGDNWRHLVDFVRNMSEGGRRQRLPDSDSQGTDLYVGHITGKEKKKKDQKLALV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00398 473 SUPERFAMILY (Trans)glycosidases 40 437 IPR017853 -
Bva08g00398 473 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 119 140 IPR001554 GO:0000272|GO:0016161
Bva08g00398 473 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 362 384 IPR001554 GO:0000272|GO:0016161
Bva08g00398 473 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 307 318 IPR001554 GO:0000272|GO:0016161
Bva08g00398 473 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 76 90 IPR001554 GO:0000272|GO:0016161
Bva08g00398 473 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 325 348 IPR001554 GO:0000272|GO:0016161
Bva08g00398 473 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 97 115 IPR001554 GO:0000272|GO:0016161
Bva08g00398 473 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 290 306 IPR001554 GO:0000272|GO:0016161
Bva08g00398 473 MobiDBLite consensus disorder prediction 12 28 - -
Bva08g00398 473 Pfam Glycosyl hydrolase family 14 45 267 IPR001554 GO:0000272|GO:0016161
Bva08g00398 473 ProSitePatterns Beta-amylase active site 1. 123 131 IPR018238 GO:0000272|GO:0016161
Bva08g00398 473 PANTHER BETA-AMYLASE 267 472 - -
Bva08g00398 473 PANTHER - 267 472 IPR001554 GO:0000272|GO:0016161
Bva08g00398 473 PANTHER - 1 269 IPR001554 GO:0000272|GO:0016161
Bva08g00398 473 MobiDBLite consensus disorder prediction 1 38 - -
Bva08g00398 473 Gene3D Glycosidases 269 469 - -
Bva08g00398 473 PANTHER BETA-AMYLASE 1 269 - -
Bva08g00398 473 Gene3D Glycosidases 34 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00398 Bva-Chr8 1987405 1990827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00398 1 461 Glycoside Hydrolase AT4G17090 72.211 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00398 K01177 - gmx:100818063 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00398 08 1987405 1990827 Bva08g00398 08 1987405 1990827 ECH