Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00307 ATGCACAAGAGCGGTTCAACTTCGTCTTTGGGTCCAGGCGGCCTAGACCTAAGTCAATCGTTCTTCAGGCCCATTCTGAATGCTGCTCCTCCCTCCCCCACCAAACGCCACAATAAGATCTCCGTCATTGGCGTCGGCAACGTCGGCATGGCCATTGCCCAAACCATCCTCACTCAAGACCTAACCGACGAGCTCCTCCTCGTTGACGTCAACCCCGATAAGCTCCGAGGAGAGATGCTTGACTTGCAGCACGCCGCCGCCTTTCTCCCCCGCACCAAGATCCACGCCTCTGATGATTACGCCATCACCGTCGGATCCGATCTGTGCATCGTTACCGCTGGTGCTCGGCAGATCGCCGGAGAGTCCAGGCTGAATCTGTTGCAGAGGAACGTCAATCTGTTTAAGAAGATCATACCCCCACTCGCTCATTACTCCCCAGACACTGTTATGCTGATCGTTTCGAACCCAGTAGACGTGCTCACTTACGTGGCCTGGAAACTCTCCGGCTTCCCCTCCAATCGTGTCATTGGATCCGGTACCAACTTGGATTCATCCAGGTTCCGTTTCCTCATCGCTGATCATCTCGACGTCAACGCTCAGGATGTCCAGGCTTGCATAGTGGGGGAACACGGGGACAGCTCGGTGGCTCTGTGGTCTAGCATTAGCATTGGGGGTGTTCCGGTGCTAAGCTTTCTGAAGAATCAACAAATTGCTTACGAGAAAGAAACACTAGAGAAGATTCATAAAGAAGTGGTAGACAGCGCTTATGAAGTGATTCGGCTGAAAGGTTACACATCTTGGGCCATAGGTTACTCGGTGGCCAGCTTAGTTCGAAGTATTCTTAGAGACCAAAGGAAGATCCACCCTGTGTCGGTTCTGGCAAAGGGATTTCACGGCATTGATGAGGGCGAAGTCTTTTTGAGTTTGCCCGCGCAGCTTGGTAGAGGAGGAGTGCTGGGTATAACCAACGTGCACTTGACCCAAGAGGAAGCACAGAGGCTCAGGGATTCTGCCAGCACCATCCACAACCTGCAGGCTCAGTTGGATTTGAAAAATTA 1058 0.5265 MHKSGSTSSLGPGGLDLSQSFFRPILNAAPPSPTKRHNKISVIGVGNVGMAIAQTILTQDLTDELLLVDVNPDKLRGEMLDLQHAAAFLPRTKIHASDDYAITVGSDLCIVTAGARQIAGESRLNLLQRNVNLFKKIIPPLAHYSPDTVMLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQACIVGEHGDSSVALWSSISIGGVPVLSFLKNQQIAYEKETLEKIHKEVVDSAYEVIRLKGYTSWAIGYSVASLVRSILRDQRKIHPVSVLAKGFHGIDEGEVFLSLPAQLGRGGVLGITNVHLTQEEAQRLRDSASTIHNLQAQLDLKN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00307 352 PIRSF Lac_mal_DH 34 352 IPR001557 GO:0016616|GO:0019752
Bva08g00307 352 Hamap L-lactate dehydrogenase [ldh]. 37 349 IPR011304 GO:0004459|GO:0005737
Bva08g00307 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 25 177 IPR036291 -
Bva08g00307 352 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Bva08g00307 352 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Bva08g00307 352 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Bva08g00307 352 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Bva08g00307 352 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Bva08g00307 352 PANTHER L-LACTATE DEHYDROGENASE 1 349 - -
Bva08g00307 352 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 1 349 - -
Bva08g00307 352 Gene3D - 22 179 - -
Bva08g00307 352 Coils Coil 343 352 - -
Bva08g00307 352 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 342 IPR022383 GO:0016616
Bva08g00307 352 Pfam lactate/malate dehydrogenase, NAD binding domain 39 177 IPR001236 GO:0016491
Bva08g00307 352 Gene3D - 180 348 IPR015955 GO:0003824|GO:0016616
Bva08g00307 352 CDD LDH_1 35 347 - -
Bva08g00307 352 SUPERFAMILY LDH C-terminal domain-like 178 347 IPR015955 GO:0003824|GO:0016616
Bva08g00307 352 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 42 342 IPR011304 GO:0004459|GO:0005737
Bva08g00307 352 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00307 K00016 - vvi:100250615 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00307 08 1506360 1508137 Bva08g00307 08 1506360 1508137 ECH