Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00260 ATGGCGGTTGCTCCCTATACGACCACACCAAGATCGCGTATTTGTCCTCCTCATAGTTGTGGAACAAAGATTTATTCAGGATTGAAGCTTCAATCAGCAAGCTTTCTTGGAGCTGGCAAACCTAATTTGACCGCTGATTTTTACGGAAAAGTTCACAAGAGTCTCCAGTGCTGGTCTAGAAACCAAAAACCAGCAAGGGCACAGATTCAGATGATGGCCATAGGGACCCCTAGAGTGCCATATAGAACGCTTGGTGAGGGGACCTGGCAATGGGTTGATTTATGGAATGCCCTTTACCGGGAACGTGTTATCATCATTGGACAAGAACTAGACGAAGAGTATAGCAACCAAATACTGGCAACTATGTTATATCTTGACAGTATAGATAACGCCAAGAGGCTCTATATGTACATCAATGGTCCTGGTGGTGATTTTACACCAAGCATGGCTATCTTTGACGTCATGCAAAGCTTACAGAGTCCTGTTACCACCCATTGTGTTGGCTTTGCTTATAATCTAGGAGCATTCCTTCTTGCAGCCGGAGAAAAGGGCAACCGGTTTGCAATGCCTCATTCAAGAATTGCTCTCCAGTCTCCAGCAGGAGCTGCTCGTGGTCAGGCTGATGACATTCTTAATGAAGCCAATGAGCTTCTTAGAATCAGAGATTACCTTTACAATGAGTTGGCCAAGAAAACGGGCCAGCCTGTAGAAAAGATTGACAAAGACTTGAGCAGGATGAAACACTTCAGTGCACAGGAGGCTCTTGAATATGGGCTTGTTGATAAAATTGTGAGGCTGCCCCACATTAAGGCTGATGCACCTCGCAAGGATAACGGAACTCGTGCCGTCCAACAAGATTTTTG 863 0.4542 MAVAPYTTTPRSRICPPHSCGTKIYSGLKLQSASFLGAGKPNLTADFYGKVHKSLQCWSRNQKPARAQIQMMAIGTPRVPYRTLGEGTWQWVDLWNALYRERVIIIGQELDEEYSNQILATMLYLDSIDNAKRLYMYINGPGGDFTPSMAIFDVMQSLQSPVTTHCVGFAYNLGAFLLAAGEKGNRFAMPHSRIALQSPAGAARGQADDILNEANELLRIRDYLYNELAKKTGQPVEKIDKDLSRMKHFSAQEALEYGLVDKIVRLPHIKADAPRKDNGTRAVQQDF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00260 287 Gene3D - 67 267 - -
Bva08g00260 287 CDD S14_ClpP_2 93 263 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva08g00260 287 Pfam Clp protease 90 264 IPR023562 -
Bva08g00260 287 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 15 277 IPR023562 -
Bva08g00260 287 SUPERFAMILY ClpP/crotonase 87 267 IPR029045 -
Bva08g00260 287 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 75 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva08g00260 287 PRINTS Clp protease catalytic subunit P signature 93 108 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva08g00260 287 PRINTS Clp protease catalytic subunit P signature 133 153 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva08g00260 287 PRINTS Clp protease catalytic subunit P signature 164 181 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva08g00260 287 PRINTS Clp protease catalytic subunit P signature 185 204 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva08g00260 287 PRINTS Clp protease catalytic subunit P signature 242 261 IPR001907 GO:0004176|GO:0004252|GO:0006508
Bva08g00260 287 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 15 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00260 Bva-Chr8 1262206 1265516 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00260 K01358 - zju:107406406 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00260 08 1262206 1265516 Bva08g00260 08 1262206 1265516 ECH