Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00227 ATGGCAAAGAATGTGGGAATTCTCGCTATGGACATCTACTTCCCACCCACATGTATTCAGCAGGAAGCATTGGAGGCTCATGATGGTGCAAGCAAAGGGAAATATACTATTGGACTAGGACAAGATTGCATGGCATTTTGCACAGAGTTGGAAGATGTCATCTCAATGAGTTTGACTGTAGTTACTTCCCTCCTCGAGAAGTATGGGGTCGATGCTAAACAAATTGGTCGTCTGGAAGTAGGCAGCGAGACTGTGATAGACAAGAGCAAATCTATCAAGACATTCCTGATGCAGATTTTTGAGAAATTTGGAAATACTGATATTGAGGGCGTTGACTCAACTAATGCATGCTATGGAGGAACTGCAGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCAGTTCATGGGATGGACGCTATGGACTTGTTGTCTGTACTGACAGTGCAGTCTATGCTGAAGGACCTGCTAGGCCTACTGGCGGAGCAGCTGCTATCGCCATGCTGATCGGTCCTGATGCTCCTATTGCTTTTGAGAGCAAATTGAGGGGAAGTCATATGTCTCATGCCTATGATTTTTACAAGCCTAATCTTGCTAGTGAATATCCGGTTGTTGATGGGAAGCTTTCTCAAACATGCTACCTCATGGCTCTTGATTCGTGCTATAAACATTTCTGTGACAAGTATGAGAAAGTTGAGGGCaagcaattttatatttctgatgctgactattttgtttttcactcACCTTATAACAAGCTTGTACAGAAAAGTTTTGCTCGTCTGTTGTTCAATGACTTCTTGAGGAATCCAAGCTCTCTGGCAGAGGGTGCTAAAGAAAAACTGCATCCTTTCTCAACTTTATCTGGTGAAGAAAGTTACCAAAACCGAGATCTTGAAAAGGCATCCCAGCAAGTTGCAAAACCTCTGTATGATGAAAAGGTGCAACCAACCACCTTGATACCAAAACAAGTTGGCAACATGTACACTGCATCTCTGTATGCAGCATTTGCATCCCTTATTCACAACAAAAAGAGCACATTGGCTGGTAACCGGGTTGTACTATTCTCATATGGCAGTGGCTTAACTGccacaatattttctttgcgACTACGTGACTGTCAACATCCATTTAGCTTGTCAAACATTTCTACGGTGATGGATATTGctggaaaattaaaatcaagacaCGAGTTTCCTCCAGAAAAGTTCGTGGAAACTATGAAGCTAATGGAGCACAGGTACGGTGCCAAGGACATTGTGACAAGCAAGGACAGTAGCCTTTTATTAACTGGCACATACTATCTCACTGAAGTTGATTCCATGTACCGGAGATTCTACGCAAAGAAGACTAGCGATAGCAGCATCACTCCCTCAAATAACGGTTCGATTGCCAATGGTCACTGTAAATA 1409 0.4088 MAKNVGILAMDIYFPPTCIQQEALEAHDGASKGKYTIGLGQDCMAFCTELEDVISMSLTVVTSLLEKYGVDAKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHFCDKYEKVEGKQFYISDADYFVFHSPYNKLVQKSFARLLFNDFLRNPSSLAEGAKEKLHPFSTLSGEESYQNRDLEKASQQVAKPLYDEKVQPTTLIPKQVGNMYTASLYAAFASLIHNKKSTLAGNRVVLFSYGSGLTATIFSLRLRDCQHPFSLSNISTVMDIAGKLKSRHEFPPEKFVETMKLMEHRYGAKDIVTSKDSSLLLTGTYYLTEVDSMYRRFYAKKTSDSSITPSNNGSIANGHCK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00227 469 Gene3D - 1 451 IPR016039 GO:0016746
Bva08g00227 469 SUPERFAMILY Thiolase-like 175 447 IPR016039 GO:0016746
Bva08g00227 469 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Bva08g00227 469 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Bva08g00227 469 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 452 - -
Bva08g00227 469 CDD init_cond_enzymes 4 368 - -
Bva08g00227 469 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Bva08g00227 469 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Bva08g00227 469 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00227 Bva-Chr8 1100200 1104899 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00227 K01641 - gmx:100782595 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00227 08 1100200 1104899 Bva08g00227 08 1100200 1104899 ECH