LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva08g00165	ATGATTATGGATCAGCCAACAAGAATGTTGGAGAGTACACGTTTTGGCTTCTCCTCCATGTTGGGTAATTGCGCCTATTGTCGGTCTTTGCACAAAGAGAGAGCACATGTGAGATGCAAGAGAGGGCAAAGGGTTATCGTTGCAACGGGGCCCGCCACAGAGGCTGCCGTTATTGCCACCAAACCACTCTCTAAAGATGACCTTATTCAGTATTTTGTATCAGGATGCAAGCCCAAAGACAAGTGGAGAATAGGTACAGAACATGAGAAGTTTGGTTTCGAGTGTGCAACTTTACGTCCTATTAAATACAAACAGATAGCAGCATTACTTAACGGCATTGCTGAGAGGTTTGattggaataaaataattgaaggtgACAACATCATAGGACTCAGAAAGGGCAAGCAAAGTATATCATTAGAGCCTGGTGGTCAATTTGAGCTTAGTGGTGTTCCTCTCAAAACATTGCATCAGAGTTGTGATGAGATTAATTCACATCTCTATCAGGCTAAAACTGTTGCAGAGGAAATGGGAATTCAATTTTTGGGATTAGGTTTCCAGCCCAAATGGAGACGTGAAGATGTACCTCGAGTTCCCAAGGTACGATATGACattttgcaaaattatttCCACAAATTTGGCTTACCTGGAATCGAGGCATTGCTTATGACATGTTCTGTTCAGGTCAACCTGGACTTCAGTTCTGAAGCAGACATGGTCAGAAAATTACGTGCCAGTCTCGCTTTGCAGCCATTGGCAGCAGCGTTATTTGCAAATTCACCTTTCACGGAAGGAGTTCCAAATGGCTACCTCAGCATAAGAagTGTCAAGGTGAATGAGGTTGACAAGAGTCGAACTGGCATGCTTCCCTTTGTTTTCTATGACACTTTTGGATTCGAGCAATATGTGGATTATGCTCTAGATGTGCCGATGGTGTTTGTTTATAGGAGAAACAAGTACATCGACTGCAGTGGCATGTCATTCAGGGATTTCATGGCGGGTAAACTCCCTGCCATTCCAGGAGAGCTGCCAACACTCAACGACTGGGAAAATCATCTGACAACCATATTTCCAGAGGTGAGGCTAAAGAGATATATGGAAATGAGGGGTGCAGACGGAGGGCCATTAAGCATGTTATGTGCACTGCCCGCTTTCTGGGTTGGTCTACTCTATGATGAGGTTTCACTGCATAACGTTCTTGATATGATTGCTGACTGGACTCCTCAAGACAGGCAGATTTTGAGGAACAaggttccTTCGACTGGGTTAAAGACTCCATTCCAAGGTAGATTGCTGTGGCACGTCGCCGAAGATGTATTGAAGTGGGCGATGGAGGGCTTGGAAAGGAGATGCTTGAATGAGTCAGTTTTCCTGGATCCATTGAAGGAAGTGGTCGAAACAGGCTTAACACCAGCTGACAAGCTCTTGGAAAAGTACCATAACAACAATAATGGATCATTTATAGCCTACTTTATTGACAATCGACTTCTCTCGCTTGGTCAGTTCTGGAAAATCGAAGTTTTTGGTGACTATTGCTTGAGTCATTGGTTTTGGCTCGTCTTCAGTTCGACTTCTCTTCAGaagaGTACCATGGTTCTGATTTCCAGGACTGGTTCACCGCACTGTATGCGCAGTGAGATAATACGGTGTAAAGCAGGGAACAATGCTTTTATTAGTAGTACAAGACATAAGTTTGACGCGTTCAATGTAAAGAAAACTTGTGTTGGTTTCTCTTCCTTGTGGGATTCTGCGAGCAAGACACAACTTTCACAGAAGAGGCTTTTTGCTTTAGTTGGAGGTAAACGGGGCCATAAAGTGATCGTTGCTGCCAGCCCACCTACAGAAGATGCTGTAGTTGTTACTGAACCACTTACAAAAAAGGATCTTGTGGATTATCTTGCCTCTGGTTGTAAGCCTAAGGAAAAATGGAGAATTGGAACAGAACATGAGAAGTTTGGTTTTGAGTTTGGAAGTCTGCGTCCTATGAAATATGAGCAGATAGCAGAGTTGCTTAATGGCATTTCTGAGAGATTTGACTGGGATAAAGTCATGGAAGGTGATAAAATTATTGGACTCAAACAGGGTAAGCAGAGCATATCTTTAGAGCCTGGTGGTCAGTTTGAGCTCAGTGGTGCTCCTCTTGAGACGTTGCACCAGACTTGTGCGGAAGTTAATTCACACCTCTATCAGGTTAAAGCTGTTGCTGAGGAAATGGGAATTGGATTTTTGGGAATTGGTTTCCAACCAAAGTGGGGACTCAAAGACATACCTATAATGCCAAAGGGAAGATATGAGATTATGAGGAATTACATGCCCAAAGTGGGTTCTCTTGGATTAGACATGATGTTCAGGACCTGCACTGTACAGGTCAATCTAGACTTCAGTTCTGAAGCTGACATGATCAGGAAATTTCGTGCTGGTCTAGCTTTGCAGCCTatAGCAACAGCTCTATTTGCGAATTCACCCTTCACAGAAGGGAAGCCAAATGGTTTTGTCAGTATGAGAAGTCAGATTTGGACTGATACTGATAAGGACCGTACAGGCATGCTGCCCTTTGTTTTTGATGACTCCTTTGGGTTTGAGCAGTATGTTGATTATGCTCTTGATGTTCCAATGTATTTCGTCTATCGAAAAGAGAATTATATCAACTGTACTGGAATGACCTTCAGGGACTTTATGGCAGGAAAGCTTCCTTGTATTCCTGGAGAATTCCCGACCCTTAATGATTGGGAGAATCACTTGACAACAATATTTCCGGAGGTGAGGctgaagagatatttggagATGAGAGGTGCTGATGGAGGGCCTTGGAGAAGGTTATGTGCTTTACCAGCATTTTGGGTAGGTTTATTGTATGATGAGGTTTCTCTACAAAGTGTTTTAGACATGACAGCTGACTGGACCCCAGAAGAAAGACATATGCTTAGGAATAagGTTCCCAGAACTGGCCTAAAAACACCATTTCGTGATGGTTTGCTGAAGCATGTTGCTGAAGATGTCCTAAAGTTGGCAAAGGAGGGCTTGGAAAGAAGAGGCTTTAAAGAATCGGGATTCTTGAATGAGGTAGCTGCGGTGGTTAGAACAGGTGTTACACCAGCTGAAAAGCTTCTGGAATTGTATCATGGAAAGTGGGGGCAATCTGTAGATCCCGTATTTGAGGAATTACTTTATTA	3173	0.4258	MIMDQPTRMLESTRFGFSSMLGNCAYCRSLHKERAHVRCKRGQRVIVATGPATEAAVIATKPLSKDDLIQYFVSGCKPKDKWRIGTEHEKFGFECATLRPIKYKQIAALLNGIAERFDWNKIIEGDNIIGLRKGKQSISLEPGGQFELSGVPLKTLHQSCDEINSHLYQAKTVAEEMGIQFLGLGFQPKWRREDVPRVPKVRYDILQNYFHKFGLPGIEALLMTCSVQVNLDFSSEADMVRKLRASLALQPLAAALFANSPFTEGVPNGYLSIRSVKVNEVDKSRTGMLPFVFYDTFGFEQYVDYALDVPMVFVYRRNKYIDCSGMSFRDFMAGKLPAIPGELPTLNDWENHLTTIFPEVRLKRYMEMRGADGGPLSMLCALPAFWVGLLYDEVSLHNVLDMIADWTPQDRQILRNKVPSTGLKTPFQGRLLWHVAEDVLKWAMEGLERRCLNESVFLDPLKEVVETGLTPADKLLEKYHNNNNGSFIAYFIDNRLLSLGQFWKIEVFGDYCLSHWFWLVFSSTSLQKSTMVLISRTGSPHCMRSEIIRCKAGNNAFISSTRHKFDAFNVKKTCVGFSSLWDSASKTQLSQKRLFALVGGKRGHKVIVAASPPTEDAVVVTEPLTKKDLVDYLASGCKPKEKWRIGTEHEKFGFEFGSLRPMKYEQIAELLNGISERFDWDKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPIMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFVSMRSQIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKENYINCTGMTFRDFMAGKLPCIPGEFPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEVSLQSVLDMTADWTPEERHMLRNKVPRTGLKTPFRDGLLKHVAEDVLKLAKEGLERRGFKESGFLNEVAAVVRTGVTPAEKLLELYHGKWGQSVDPVFEELLY	1057

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva08g00165	1057	PANTHER	GLUTAMATE--CYSTEINE LIGASE	25	483	-	-
	Bva08g00165	1057	Gene3D	-	48	493	-	-
	Bva08g00165	1057	Gene3D	-	609	1057	-	-
	Bva08g00165	1057	Pfam	Glutamate-cysteine ligase family 2(GCS2)	116	406	IPR006336	GO:0004357\|GO:0042398
	Bva08g00165	1057	Pfam	Glutamate-cysteine ligase family 2(GCS2)	676	967	IPR006336	GO:0004357\|GO:0042398
	Bva08g00165	1057	PANTHER	GLUTAMATE--CYSTEINE LIGASE	593	1057	-	-
	Bva08g00165	1057	PANTHER	GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC	593	1057	IPR035434	GO:0004357\|GO:0006750
	Bva08g00165	1057	PANTHER	GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC	25	483	IPR035434	GO:0004357\|GO:0006750
	Bva08g00165	1057	SUPERFAMILY	Glutamine synthetase/guanido kinase	635	1055	IPR014746	GO:0003824
	Bva08g00165	1057	SUPERFAMILY	Glutamine synthetase/guanido kinase	74	484	IPR014746	GO:0003824
	Bva08g00165	1057	TIGRFAM	glu_cys_lig_pln: glutamate--cysteine ligase	64	487	IPR011556	GO:0004357\|GO:0006750
	Bva08g00165	1057	TIGRFAM	glu_cys_lig_pln: glutamate--cysteine ligase	623	1057	IPR011556	GO:0004357\|GO:0006750

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva08g00165	Bva-Chr8	802682	813674	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva08g00165	K01919		-	qsu:111985770	921.383

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva08g00165	08	802682	813674	Bva08g00165	08	802682	813674	BWGD
	Bva08g00165	08	802682	813674	Bva08g00165	08	802682	813674	ECH