Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00144 ATGTCTTCGCCTAGCAAACGTCGAGAGATGGACTTGATGAAGctGATGATGAGTGATTACAGGGTGGAAATGGTCAACGATGGAATGCAAGAATTTTATGTGCATTTTCACGGGCCcaaagaaaGTCCTTATCACGGAGGTGTCTGGAAGATAAGAGTGGAGCTCCCCAATGCTTATCCTTATAAATCTCCATCTATTGgctttatcaataaaatttaccaCCCTAATGTTGATGAAATGTCTGGCTCAGTTTGCTTAGATGTTATTAACCAGAGCTGGAGTCCCATGTTTGACCTTGTTAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTTTGTACCCCAACCCATCAGATCCATTGAACGGTGAAGCTGCTGCTTTGATGATGCATGATCGTGCTGCATATGAACAAAGAGTCAAAGAATATTGTGAAAAATATGCCAAGGCAGAACATGTTGGAGCTGCTGAGGAGGAGAAATCCAGTGAGGAGGAGCTGAGCGAGGACGATTATGTCTCTAGCGATGAGGCAATTGCTGGCCAACCTGAtcctta 551 0.4138 MSSPSKRREMDLMKLMMSDYRVEMVNDGMQEFYVHFHGPKESPYHGGVWKIRVELPNAYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQSWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMHDRAAYEQRVKEYCEKYAKAEHVGAAEEEKSSEEELSEDDYVSSDEAIAGQPDP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00144 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 183 - -
Bva08g00144 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Bva08g00144 183 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Bva08g00144 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Bva08g00144 183 SMART ubc_7 4 148 - -
Bva08g00144 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 183 - -
Bva08g00144 183 MobiDBLite consensus disorder prediction 152 183 - -
Bva08g00144 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Bva08g00144 183 Coils Coil 132 152 - -
Bva08g00144 183 CDD UBCc 7 143 IPR000608 -
Bva08g00144 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00144 Bva-Chr8 696796 699344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00144 26 177 Miscellaneous Gene Families AT1G17280 24.118 5.03e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00144 K10576 - gmx:100804969 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00144 08 696796 699344 Bva08g00144 08 696796 699344 ECH