Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva08g00125 ATGGAAGAGAGGAGAGTTTCGTTGCTGGAATTAATTGCATTTCCGAAATCTCAGGTAAAGGTAATGGTTATGGATGCACTAGTATTTCTGGTTCTTGTAGCCGTTTTACCTAGCATAACAGTAGTAGAGAGTCGCAAAGCAGGGATTCTGGACAGCTTGGAGTACTCAGCTTTGAGCTGCAGGGGTCACAGTGCATCGTTGACGGAATTTGGAGGTGTTGGCGATGGAACAACTTTGAACACCAAAGCTTTTCAGGCAGCAATTGATCATCTGAGCCAGTATGCATCCGACGGTGGCTCTCAACTTTATGTTCCTCCAGGAAGATGGTTGACTGGCAGCTTCAATCTCACGAGTCATTTCACTTTATTCCTCGACAAGGATGCTGTACTTCTTGCCTCGCAGGATGAAGGTGACTGGGCAGTGATCGATCCCCTGCCATCCTATGGTCGAGGAAGGGACACAGAAGGTGGAAGGTTTATTAGTCTAATATTCGGAACAAACCTCACGGATGTGATCATAACTGGGGACAATGGAACAATTGATGGTCAAGGGGCTCCCTGGTGGGAAAAGTTCCACAAGGGCCAGCTCAACTACACGCGGCCTTACTTGATTGAAATCATGCACTCACAGAATATTCAGATATCTAATCTTGTTTTGGTTAATTCTCCATCCTGGCATGTGCATCCTGTTTACTGCAgCAATGTTCTTGTTCAAGGCCTTACTATCCTTGCACCAGTGACAGTCCCAAATACTGATGGAATCAACCCTGATTCTTGCACTAATACTCGAATTGAGGATTGTTATATTGTTTCTGGGGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCCACCAAGCAGCTGTTAATCAGAAGACTCACTTGTATTTCTCCATTCAGTGCTGTGATCGCATTAGGGAGTGAGATGTCTGGCGGGATTCAAGATGTCAGGGCTGAAGACATTGTAGCCATTAATTCAGAATCAGGAGTTAGGATTAAAACTGCTGTAGGAAGAGGAGGCTACGTCAAAGACATTTATGTTAGAAGGATGACCATGAAAACCATGAAATGGGCATTTTGGATGACGGGAAATTACGGCTCTCATCCTGATAAAAACTACGATCCTAATGCGGTGCCTCTGATTCAGAATATTAATTATCGTGATATTATCGCGGACAATGTTACCATGGCAGCAAGATTAGAGGGTATTTCTGGTGACCCATTCACTGGAATCTGCATATCCAACGTAACCATTGGACTTGCCAAAAAGGCTAAAAAAGTTCCATGGACTTGCACTGATGTTGCTGGGATTTCAAGTGGTGTGACACCTAAGCCATGTGATCAGTTAACAGACCAGGGATCAGAGATGATGACGGCATGTACCTTCCCAGAAGATAGCCTGCCCATTGATAACGTTCAAGTTCAAACTTGCACTTGCACAAGAAAGCATTTGTA 1478 0.4445 MEERRVSLLELIAFPKSQVKVMVMDALVFLVLVAVLPSITVVESRKAGILDSLEYSALSCRGHSASLTEFGGVGDGTTLNTKAFQAAIDHLSQYASDGGSQLYVPPGRWLTGSFNLTSHFTLFLDKDAVLLASQDEGDWAVIDPLPSYGRGRDTEGGRFISLIFGTNLTDVIITGDNGTIDGQGAPWWEKFHKGQLNYTRPYLIEIMHSQNIQISNLVLVNSPSWHVHPVYCSNVLVQGLTILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLLIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINSESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGNYGSHPDKNYDPNAVPLIQNINYRDIIADNVTMAARLEGISGDPFTGICISNVTIGLAKKAKKVPWTCTDVAGISSGVTPKPCDQLTDQGSEMMTACTFPEDSLPIDNVQVQTCTCTRKHL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva08g00125 492 Gene3D - 49 446 IPR012334 -
Bva08g00125 492 Pfam Glycosyl hydrolases family 28 162 441 IPR000743 GO:0004650|GO:0005975
Bva08g00125 492 Pfam Pectate lyase superfamily protein 67 148 IPR024535 -
Bva08g00125 492 PANTHER PECTIN LYASE-RELATED 23 489 - -
Bva08g00125 492 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 23 489 - -
Bva08g00125 492 SUPERFAMILY Pectin lyase-like 55 483 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva08g00125 Bva-Chr8 630972 635179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva08g00125 51 492 Glycoside Hydrolase AT4G23500 74.434 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva08g00125 - - gmx:100785841 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva08g00125 08 630972 635179 Bva08g00125 08 630972 635179 ECH