Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02536 ATGCACGCTCTCGTTGGAAGTAGAAAGTCAAGAATTATTAAAACCCAATGGTTTGAACTCTTCATCTGTCGTCGTTTTTTCCAATCACAAGCAGATGCCTATGCTCGAATTATCCAGATTTACGCTCGTGATCGAGCAGTACACTTGGGAAAGAAACTCCATGCCCACCTAATCATCAATGGCTTAGTCGGTTTGACCGTTATTGCTTCCAAGCTCATAGCCTTCTACGCAGCCTGTGGGAAACTCTCGATTGCCCGCAAACTGTTCGAAGGAATTCCCACTACAAATGTTCACCGCTGGATCGCTCTCATTGGGTCATGCTCTCGCTGCGGCTTCTACAAGGAGGCTCTTGGTATCTTCTCCGAGATGCAAACTGAAGGCCTGAACCCCAACAAGTTTGTAATTCCAAGCGTTCTTAAAGCTTGTGGGCACGTCTGTGATGGAAAGACTGGGGAGAAGTTACATGGAATAATATTGAAATGTTCATTCCAGCTTGATGCTTTTGTAACTAGTGCATTGATTGATATGTACTCgaaaagtggaaaaattgaagaagcGCGGAGGGTGCTTGATGGGATGGTTGAGAAAGATATAGTGGCACTCAATGCCATTGTTTCTGGCTATGCTCATATAGGCCGTGCCAAGGACGCTTTGATTTTGGTTGAAAGTATGAAATCGGTGGGTCTGAAGCCTAACTTGGTTACTTGGAACGCATTGATCGCTGGATATTCACAAAAAGGTGATCAAATGATGGTTGATGAGCTTTTCAGGTCGATGCTTGCAGATGGTGTTGAGCCTGATGTGATATCCTGGACTTCTGTAATATCGGGTTTTgtgcagaattttcataatGAGGAGGCATTTTATACATTCAGAAAAATGTTATGCCGTGGCTTCTGCCCCACTTCAGCTACAATCAGCGCACTTCTTCCTGCTTGTTCTACTGCAGCAAAAGTGAGGCGTGGGAAGGAGCTTCATGGCTATGCATTGGTAATTGGGGTCAAGGAAGATATATATGTAAGCAGTGCTCTTGTTGACATGTATGCAAAGTGTGGTTTCATATCTGAAGCGAGGACAATATTCTGCAAGATGCCTCGGAAGAACACAGTTTCATGGAACTCCATGATTTTCGGCTATGCAAATCATGGGCACTATGACGAGGCAATTGAGCTGTTCAATCAGGTGGAGAAGGAAGGGGGAGGCCATCTTGATCACCTGACTTTCACAGCAGTTCTCACTGCATGTAGCCATGCTGGTTATACTGAACTTGGGCAAAATCTGTTCAAaatcatgaaagaaaaatataatattgagcCAAGACTGGAGCATTATGCATGCATGGTGGATCTTACAGGCCGAGCAGGGAAACTTGATGAAgcatataatatgataaaggCAATGCCGATTAAACCTGATTTATTTGTATGGGGAGCATTGCTGGCTGCTTGTAGGAATCATGGGCACGTGGATCTTGCTGAAATAGCTGCTAAGCATTTGCTGGAACTAGAGCCCGAGAGTGCAGGGAACCGCCTTCTTTTGTCAAGTTTATATGCTGATGCTGGCAAATGGGGAAAGGTGGAGTGGTTGAggaaaatgatgaagaagagaaaactgAGGAAACTAGCAGGTTGTAGTTGGATAGATACATTTTG 1652 0.4207 MHALVGSRKSRIIKTQWFELFICRRFFQSQADAYARIIQIYARDRAVHLGKKLHAHLIINGLVGLTVIASKLIAFYAACGKLSIARKLFEGIPTTNVHRWIALIGSCSRCGFYKEALGIFSEMQTEGLNPNKFVIPSVLKACGHVCDGKTGEKLHGIILKCSFQLDAFVTSALIDMYSKSGKIEEARRVLDGMVEKDIVALNAIVSGYAHIGRAKDALILVESMKSVGLKPNLVTWNALIAGYSQKGDQMMVDELFRSMLADGVEPDVISWTSVISGFVQNFHNEEAFYTFRKMLCRGFCPTSATISALLPACSTAAKVRRGKELHGYALVIGVKEDIYVSSALVDMYAKCGFISEARTIFCKMPRKNTVSWNSMIFGYANHGHYDEAIELFNQVEKEGGGHLDHLTFTAVLTACSHAGYTELGQNLFKIMKEKYNIEPRLEHYACMVDLTGRAGKLDEAYNMIKAMPIKPDLFVWGALLAACRNHGHVDLAEIAAKHLLELEPESAGNRLLLSSLYADAGKWGKVEWLRKMMKKRKLRKLAGCSWIDTF 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02536 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 196 IPR002885 -
Bva07g02536 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 549 - -
Bva07g02536 550 SUPERFAMILY TPR-like 351 525 IPR011990 GO:0005515
Bva07g02536 550 Pfam PPR repeat family 367 416 IPR002885 -
Bva07g02536 550 Pfam PPR repeat family 266 313 IPR002885 -
Bva07g02536 550 Pfam E motif 486 548 IPR046848 -
Bva07g02536 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Bva07g02536 550 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Bva07g02536 550 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Bva07g02536 550 TIGRFAM PPR: pentatricopeptide repeat domain 171 199 IPR002885 -
Bva07g02536 550 TIGRFAM PPR: pentatricopeptide repeat domain 370 399 IPR002885 -
Bva07g02536 550 TIGRFAM PPR: pentatricopeptide repeat domain 102 131 IPR002885 -
Bva07g02536 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Bva07g02536 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Bva07g02536 550 Gene3D Tetratricopeptide repeat domain 285 397 IPR011990 GO:0005515
Bva07g02536 550 Gene3D Tetratricopeptide repeat domain 398 547 IPR011990 GO:0005515
Bva07g02536 550 Gene3D Tetratricopeptide repeat domain 9 147 IPR011990 GO:0005515
Bva07g02536 550 Gene3D Tetratricopeptide repeat domain 152 252 IPR011990 GO:0005515
Bva07g02536 550 PANTHER OS03G0271300 PROTEIN 28 549 - -
Bva07g02536 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Bva07g02536 550 Pfam Pentatricopeptide repeat domain 195 243 IPR002885 -
Bva07g02536 550 Pfam PPR repeat 100 128 IPR002885 -
Bva07g02536 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02536 Bva-Chr7 20212960 20215823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g02536 85 548 Glycoside Hydrolase AT3G49170 31.800 8.17e-87 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02536 - - qlo:115986495 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02536 07 20212960 20215823 Bva07g02536 07 20212960 20215823 ECH