LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva07g02443	ATGGCAGCATCACGAGTATCCAATCTTACCCACTATTCCATCTTTCAATCTTCTCCGTCAGATGCCGGACTACcgaccagcttcaaagttgttgaAGCTCATTCGAAACGGTACCGTAACATCAGCATTCAAGCTTCACTTCAGAGAGAGAATGAGCCTAACAATAATTTCCAGGCTCTCGAATCACAAAGTAGCCTTGGTGACTTTCAATCTGACGTCGTCTCTAAAGATCCGAATACCCTTCCGCGACCCTTATCCTCGACACAGCTCTCTAGTTCAGTTTCTGATCGTTCCCGCCTTCGTGTTGCATACCAGGGGGTTCGTGGGGCTTACAGTGAGTCAGCGGCACAAAAGGCTTATCCAAATTGTGAAGCAGTGCCTTGCGAACAATTTGACACTGCTtttgaaGCCGTTGAAAGGTGGCTTGTGGATAGAGCAGTTTTGCCCATCGAAAATTCTTTAGGAGGGAGTATCCATAGAAATTATGACCTTTTATTGCGGCACAGTTTGCATATAGTAGGAGAAGTGAAATATGCAGTCCGTCATTGCCTGTTGGCCAACCATGGTGTTAAAATTGAGGATTTGAAGCGGGTTCTTAGTCACCCACAGGCTCTTGCTCAGTGTGAGAACACATTGACAAGGTTGGGATTGGTGAGAGAAGCAGTAGATGATACAGCTGGTGCCGCAAAGCATGTTGCTTTCCACAAACTAGAAGATGCAGGAGCTGTTGCTAGTTCTGCTGCTGCAGAGATATATGGCCTGAATATACTTGCTCAAGACATTCAGGATGATAGTGATAACATTACTCGGTTTCTAATGTTAGCGCGAGAACCTATAATTCCTGGCACAGATAGGGCATTTAAGACAAGCatagttttttctttagagGAGGGGCCTGGAGTACTTTTTAAGGCACTTGCTGTTTTTGCTCTGCGTCAAATTAACCTTACAAAGATTGAAAGTCGTCCTTTGAGGAAACAGCCTTTGCGAGGATCTGATGACAACAACACCAAGTATTTCGATTACCTTTTTTATGTGGATTTTGAAGCATCAATGGCTGATCAGAGTGCACAAAATGCCTTAGGGCATCTAAATGAGTTCGCTACATTCTTAAGAGTGCTAGGGAGTTATCCAGTGGACACAAGCATGGCATA	1154	0.4307	MAASRVSNLTHYSIFQSSPSDAGLPTSFKVVEAHSKRYRNISIQASLQRENEPNNNFQALESQSSLGDFQSDVVSKDPNTLPRPLSSTQLSSSVSDRSRLRVAYQGVRGAYSESAAQKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHSLHIVGEVKYAVRHCLLANHGVKIEDLKRVLSHPQALAQCENTLTRLGLVREAVDDTAGAAKHVAFHKLEDAGAVASSAAAEIYGLNILAQDIQDDSDNITRFLMLAREPIIPGTDRAFKTSIVFSLEEGPGVLFKALAVFALRQINLTKIESRPLRKQPLRGSDDNNTKYFDYLFYVDFEASMADQSAQNALGHLNEFATFLRVLGSYPVDTSMA	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva07g02443	384	MobiDBLite	consensus disorder prediction	69	93	-	-
	Bva07g02443	384	Pfam	Prephenate dehydratase	102	278	IPR001086	GO:0004664\|GO:0009094
	Bva07g02443	384	ProSitePatterns	Prephenate dehydratase signature 2.	316	323	IPR018528	GO:0004664\|GO:0009094
	Bva07g02443	384	ProSitePatterns	Prephenate dehydratase signature 1.	252	274	IPR018528	GO:0004664\|GO:0009094
	Bva07g02443	384	ProSiteProfiles	ACT domain profile.	290	378	IPR002912	-
	Bva07g02443	384	PANTHER	PREPHENATE DEHYDRATASE P PROTEIN	27	383	-	-
	Bva07g02443	384	Gene3D	-	185	264	-	-
	Bva07g02443	384	ProSiteProfiles	Prephenate dehydratase domain profile.	101	276	IPR001086	GO:0004664\|GO:0009094
	Bva07g02443	384	SUPERFAMILY	ACT-like	271	379	IPR045865	-
	Bva07g02443	384	Gene3D	-	283	381	-	-
	Bva07g02443	384	SUPERFAMILY	Periplasmic binding protein-like II	101	282	-	-
	Bva07g02443	384	CDD	ACT_CM-PDT	288	378	-	-
	Bva07g02443	384	Gene3D	-	95	184	-	-
	Bva07g02443	384	CDD	PBP2_Ct-PDT_like	101	278	-	-
	Bva07g02443	384	PANTHER	AROGENATE DEHYDRATASE	27	383	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva07g02443	Bva-Chr7	19713532	19717130	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva07g02443	K05359		-	gmx:100787387	557.37

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva07g02443	07	19713532	19717130	Bva07g02443	07	19713532	19717130	ECH