Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g02340 ATGCAAGCAGCGTTGGCAGTCATGGCTGCCCATACTGTCCTCTCAGTCTCGCCATTTCAACTTCGAACTCTCCTTTCTCCCTCTGCAAATCCTAACCCACTTCTTCAATCATCCTTCCACGGTGCCTCCTTTAAGTTCACACCAAAATCCCTAACCCTTGCCGCCACTCCTTCAAAGCCACTAACCGTTGTCGCTGTCTCCAAGAAAGCCGTAGCTGTCCTGAAGGGCAATTCCGCTGTTGAAGGCGTTGTGACTTTAACCCAAGAAGACAATgGTCCAACCAAAGTAAGTGTTCGTGTTACTGGACTGACTCCAGGGCCTCATGGTTTTCATCTACATGAGTATGGTGATACAACAAATGGGTGTATATCAACTGGAGCACATTTTAATCCTAATAACTTAACACACGGTGCTCCCAAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGCTGCTAATGCTGATGGAGTTGCAGAGGCAACAATTGTGGACAACCAGATACCACTGAGCGGTCCCAATTCAGTAGTTGGAAGAGCCTTCGTGGTTCATGAACTTGAGGATGACCTTGGAAaagGTGGGCATGAACTTAGTCTGACTACTGGTAATGCTGGTGGAAGATTGGCATGTGGTGTGGTTGGCTTGACTCCAATATG 659 0.478 MQAALAVMAAHTVLSVSPFQLRTLLSPSANPNPLLQSSFHGASFKFTPKSLTLAATPSKPLTVVAVSKKAVAVLKGNSAVEGVVTLTQEDNGPTKVSVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNLTHGAPKDEVRHAGDLGNIAANADGVAEATIVDNQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g02340 219 Pfam Copper/zinc superoxide dismutase (SODC) 80 214 IPR001424 GO:0006801|GO:0046872
Bva07g02340 219 Gene3D Superoxide dismutase, copper/zinc binding domain 64 218 IPR036423 GO:0006801|GO:0046872
Bva07g02340 219 SUPERFAMILY Cu,Zn superoxide dismutase-like 68 216 IPR036423 GO:0006801|GO:0046872
Bva07g02340 219 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 203 214 IPR018152 -
Bva07g02340 219 PANTHER SUPEROXIDE DISMUTASE [CU-ZN] 3 65 217 - -
Bva07g02340 219 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 109 119 IPR018152 -
Bva07g02340 219 PRINTS Cu-Zn-superoxide dismutase family signature 145 154 IPR001424 GO:0006801|GO:0046872
Bva07g02340 219 PRINTS Cu-Zn-superoxide dismutase family signature 189 215 IPR001424 GO:0006801|GO:0046872
Bva07g02340 219 PRINTS Cu-Zn-superoxide dismutase family signature 164 186 IPR001424 GO:0006801|GO:0046872
Bva07g02340 219 PRINTS Cu-Zn-superoxide dismutase family signature 109 131 IPR001424 GO:0006801|GO:0046872
Bva07g02340 219 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 65 217 IPR024134 -
Bva07g02340 219 CDD Cu-Zn_Superoxide_Dismutase 68 211 IPR001424 GO:0006801|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g02340 Bva-Chr7 19130369 19133612 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g02340 K04565 - nnu:104587340 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g02340 07 19130369 19133612 Bva07g02340 07 19130369 19133612 ECH