Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01880 ATGGCTCCCGTTGGTCCTCGATCCGGCGATGCCATATTCGCTAGCGTTGAGCGCGTGAACGCAGAGCTATTTACTTTGACGTATGGGGCGATTGTGCGTCAGTTGCTTACAGATCTGGAAGAGGTTGAGGAGGTTAACAAGCAACTCGATCAAATGGGTTACAATATTGGAATCCGTTTGATTGACGAGTTTCTAGCAAAATCTAATGTCTCGAGATGTGTGGACTTCAAAGAAACGGCTGAAGTTATAGCAAAGGTTGGTTTTAAAATGTTCCTTGGTGTTACCGCATCCGTGACCAATTGGGATGCTGAGGGGACATGTTGCAGTATTGTTTTGGAGGATAATCCCTTGGTAGACTTTGTTGAGCTTCCTGATACCTGTCAAGGTCTCTACTATTGCAACATTTTAAGTGGAGTCATTAGAGGTGCCTTAGAGATGGTGTCAATGAAGACTGAAGTCACATGGGTCCGTGACATGCTTCGAGGTGATGATGTGTTTGAGTTGCAGGTAAAGCTTCTCAAGCAAGTTCCAGAGGAGTATCCATACAAGGACGATGAGTA 560 0.4518 MAPVGPRSGDAIFASVERVNAELFTLTYGAIVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFKETAEVIAKVGFKMFLGVTASVTNWDAEGTCCSIVLEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWVRDMLRGDDVFELQVKLLKQVPEEYPYKDDE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01880 186 PIRSF TRAPP_1_Bet3 4 185 IPR016721 GO:0030008|GO:0048193
Bva07g01880 186 SUPERFAMILY Ligand-binding domain in the NO signalling and Golgi transport 18 176 IPR024096 -
Bva07g01880 186 CDD TRAPPC3_bet3 20 174 IPR016721 GO:0030008|GO:0048193
Bva07g01880 186 PANTHER PROTEIN PARTICLE COMPLEX SUBUNIT, PUTATIVE-RELATED 1 186 - -
Bva07g01880 186 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 1 186 IPR016721 GO:0030008|GO:0048193
Bva07g01880 186 Gene3D Trafficking protein particle complex subunit 3 5 185 - -
Bva07g01880 186 Coils Coil 32 52 - -
Bva07g01880 186 Pfam Transport protein particle (TRAPP) component 24 171 IPR007194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01880 Bva-Chr7 16894926 16897846 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01880 K20302 - jre:108993490 366.696