Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01767 ATGGCATCAACAATCTTCTCTACAATCTTGGGTAAATCTCTAAGATTCTCTGAAAATTTGTTACTTGCAAGATCATACTGCTCGGCTAGGAGATTTATTAACAGAAGAAACCTCTACTCTCGAATCAGTCCTCTTGGCGACCCTTCTATCAGTTTAATCCCTGTTCTTGATAGGTGGGTTGAAGAAGGCAACGCAGTCAAAGCGACCGAGCTCCAGCACATCGTTAAAGACCTTCGTGGCAGCAAACGGTTCAAGCAAGCACTCGAGGTTTCAGAATGGATGAGTAGCAAAAAACTATGCCCATTTTCACCAGGTGATCAAGCAGTGCAGCTAGAGCTTATCGGCAGAGTACGTGGGCTAGATTTTGCAGAGAGCTATTTTCAGAACCTAATTGACGAAGATAAAACTGATAAGCGTTATGGTGCTATGTTAAATTGTTATGTCAGAGAAGGCCTAATTGATAAGTCACTCTCCTATATGCAGAAGATAAAGGATATGGGTTTTGCTTCTGCTCTAAACTACAACAATATAATGTGCCTCTATACACACACGGATCAATTTGAAAAGGTCCCTGGTGTTTTGTCTCAAATGAAGGAGGATGGCATATCCCCAGACATTTTTAGCTATAGGATCTGCATCAGCTCTTATGGTGCAAGATCTGACCTTGAGAACATGGAGAAAGTGTTGGAGGAAATGGAAAAGCAAAGCCACGTTTCGACAGATTGGATGACATATTCGATGGTGGCCAGCTACTACATAAAAGCAGGTCTAAAGGAGAAAGCTCTGATTCACCTGAAGAAGTGTGAGGATAAGGTTGACAAGAATGCTCTTGGCTACAACCATCTGATTTCACACTATGCGAGTCTTGGGAACAAAAAAGCAATGATGAGATTGTGGAACCTACAAAAAGCCAAATGTAAGAAGCAACTTAACAGGGATTATATAACCATCCTGGGTTGTCTGTTGAAGCTTGAGGAGCTTGaggaaatggaaaaattaattgaggaATGGGAATCATCTGCTAACTACTATGATTTCAGAGTAACAAACATCCTCCTGATTGGGTATACTCGCAAAGGACTGATGGAAACTGCAGAAAAAGTGCTCCGGAGCATTGTGAAGAAAGGGAAGACTCCAACTCCCAATAGTTGGGTTATCATTGCATATGGATATTTGGAAAAGCAAAACATGGCGCAGGCGTTTCTGTGCCTGAAGGAAGCATTGGCTGTACGAGCTGAAAATAAAGGTTGGAAGCCAAAATCCGATGGCTTTTCAACTGTGTTAAGTTGGGCTGCCGATAACAGAGATTTGGACGAAGTGGTAGATTTTGCAGACTCCTTAAAGACTGTGATTCCCCTGAATAGAGACATGTATCTTTCCTTGATAAAGATGTATGTTAGACGTGGGAAGGAAGTAGATGGACTCTTGGAGAATATGAAAGATGATAAGATAGAGGTCGATGAAGAGATAGAGAAAATCCTTGGCTCAAGAcaagaata 1499 0.4096 MASTIFSTILGKSLRFSENLLLARSYCSARRFINRRNLYSRISPLGDPSISLIPVLDRWVEEGNAVKATELQHIVKDLRGSKRFKQALEVSEWMSSKKLCPFSPGDQAVQLELIGRVRGLDFAESYFQNLIDEDKTDKRYGAMLNCYVREGLIDKSLSYMQKIKDMGFASALNYNNIMCLYTHTDQFEKVPGVLSQMKEDGISPDIFSYRICISSYGARSDLENMEKVLEEMEKQSHVSTDWMTYSMVASYYIKAGLKEKALIHLKKCEDKVDKNALGYNHLISHYASLGNKKAMMRLWNLQKAKCKKQLNRDYITILGCLLKLEELEEMEKLIEEWESSANYYDFRVTNILLIGYTRKGLMETAEKVLRSIVKKGKTPTPNSWVIIAYGYLEKQNMAQAFLCLKEALAVRAENKGWKPKSDGFSTVLSWAADNRDLDEVVDFADSLKTVIPLNRDMYLSLIKMYVRRGKEVDGLLENMKDDKIEVDEEIEKILGSRQE 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01767 499 Pfam PPR repeat 350 376 IPR002885 -
Bva07g01767 499 Pfam PPR repeat 140 168 IPR002885 -
Bva07g01767 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Bva07g01767 499 Gene3D Tetratricopeptide repeat domain 66 230 IPR011990 GO:0005515
Bva07g01767 499 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Bva07g01767 499 PANTHER OS12G0527900 PROTEIN 19 498 - -
Bva07g01767 499 Pfam Pentatricopeptide repeat domain 193 248 IPR002885 -
Bva07g01767 499 Gene3D Tetratricopeptide repeat domain 231 341 IPR011990 GO:0005515
Bva07g01767 499 Gene3D Tetratricopeptide repeat domain 345 498 IPR011990 GO:0005515
Bva07g01767 499 Coils Coil 215 235 - -
Bva07g01767 499 TIGRFAM PPR: pentatricopeptide repeat domain 174 206 IPR002885 -
Bva07g01767 499 TIGRFAM PPR: pentatricopeptide repeat domain 140 168 IPR002885 -
Bva07g01767 499 TIGRFAM PPR: pentatricopeptide repeat domain 207 238 IPR002885 -
Bva07g01767 499 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 19 498 - -
Bva07g01767 499 SUPERFAMILY HCP-like 146 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01767 Bva-Chr7 16250886 16253511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01767 30 482 EF-hand Containing Proteins AT1G02150 32.543 1.23e-79 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01767 - - lja:Lj0g3v0287449.2 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01767 07 16250886 16253511 Bva07g01767 07 16250886 16253511 ECH