Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01727 ATGCGTTTCGTTATTTTACCTCAGAGCCCATTTGTTCATGAAGAGGCCCAATCATTCTATAAGAGGATGATTTTCATCCGACCCCGCCCGTGGGACAAATCCAGCACCACCAACATGCTGCGCAAAATCAAACTGGTAACAACTCTCTCCCGGGAAAACAATCAAGGGATCCTCAAACCTCTATCTTTGGATCCTCTCTCTCACAATCCCGTGTCAAGCATTGTCCGTTCCCACCTTTACAACGTAAGCAACCTTCGAAGCCCAGAGAGTCAAAATTCCGAGACTACAACCCCAAGACCCCAACAGTATTTTCTGGGAATCATTGAAACAACTCGCTTAGTGCACTCTATTGCTCACTCTGAAAAATCCACCAATTCGAACCAAGACCCATCTTATCAATCAGCTCTCTTCGTTCAGAATCTCCTCAAGTTTCGAAGAAGCAAACCCATCGAGCAGATTGAGCAAGCTCTTGGTCAATGTGGGTTTGAGCTGAATGATGATTTAGTTCTGAACGTGCTTCGAAGGCATCGTTCTGATTGGAAACCAGCATATGTATTCTTTAATTGGATTTCCAAGGTAAGTATCGCGGGAAATGGATACACTCCTAGTTCTGAGGTTTGGAATGAGATCCTTGACATTCTTGGGAAAATGAAGCGCTTTGAGGAAGTGAACCAagtgtttgatgaaatgtcaAAAAGAAAGGGACTTGTAAATGAAGAAACGTTTCGGACTTTGCTCAATAGATACTCGGCTGCGCACATGGTTCAGGAAACAATTGATATATTCTACAAGAGGAAAGAGTTCGGAATGGAGCTTGATTCCACGGCTTTTCAGACACTTTTGATGTGGTTGTGTAGGTACAAGCATGTAGAAGCTGCAGAAACTTTGTTTTATAGTAAGCGGAAAGAATTTCGTCCAGATATAAAGACATGGAATGTGATTCTCAATGGTTGGTGTGTTTTGGGGAATGTACACGAGGCAAAAAGGTTCTGGAAAGATATATTAGCATCTGGATGCAAGCCAGATCTTTTTACATATGGAACGTTTATTAAGGCATTGACAAAGAAGGGGAAATTGGGCACGGCGCTAAAGTTGTTTAGAGGCATGTGGGATAAGGGTTGCAAAACAGACGTTGTGATCTGCAATTGTATCATTGATGCACTTTGTTTCAAGAAGAGGATTCCTCAAGCTTTGGAAGTTTTCCATGAAATGAATGAGCGAGGTTGTCCCCCGAATGTGGCAACTTACAATTCACTCGTTAAGTATCTCTGTAAGATACGGCGTATGGAAAAGGTCTATGAACTTGTAAATGAAATGGAATACAAGAAGGGAAGTTGTTTGCCAAATGCTATTACTTACAGTTACTTGCTAAGTTCTTTGAAGAATCCAGAGGAAGTTCCTAAGCTTTTAGAGAGAATGGAGAGAAATGGATGCAACATGAATGATGACATATACAACTTGATTTTAAGGCTGTACATGGAGTGGGATGATCAGGATGGAGTAAGAAAAACATGGGAAGAAATGGAGAGAAATGGCTGGGGACCGGACCAGCGATCGTATACAATCATGATTCATGGTCACTATGACAAACGGAGAACGAAGGATGCTTTAAGGTATTTCAAGGAGATGACATCAAAAGGAATGGTGCCAGAGCCAAGGACTGAGAACTGGTA 1673 0.416 MRFVILPQSPFVHEEAQSFYKRMIFIRPRPWDKSSTTNMLRKIKLVTTLSRENNQGILKPLSLDPLSHNPVSSIVRSHLYNVSNLRSPESQNSETTTPRPQQYFLGIIETTRLVHSIAHSEKSTNSNQDPSYQSALFVQNLLKFRRSKPIEQIEQALGQCGFELNDDLVLNVLRRHRSDWKPAYVFFNWISKVSIAGNGYTPSSEVWNEILDILGKMKRFEEVNQVFDEMSKRKGLVNEETFRTLLNRYSAAHMVQETIDIFYKRKEFGMELDSTAFQTLLMWLCRYKHVEAAETLFYSKRKEFRPDIKTWNVILNGWCVLGNVHEAKRFWKDILASGCKPDLFTYGTFIKALTKKGKLGTALKLFRGMWDKGCKTDVVICNCIIDALCFKKRIPQALEVFHEMNERGCPPNVATYNSLVKYLCKIRRMEKVYELVNEMEYKKGSCLPNAITYSYLLSSLKNPEEVPKLLERMERNGCNMNDDIYNLILRLYMEWDDQDGVRKTWEEMERNGWGPDQRSYTIMIHGHYDKRRTKDALRYFKEMTSKGMVPEPRTENW 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01727 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 442 IPR002885 -
Bva07g01727 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Bva07g01727 557 Pfam PPR repeat 457 478 IPR002885 -
Bva07g01727 557 Pfam PPR repeat 519 547 IPR002885 -
Bva07g01727 557 Pfam PPR repeat 206 233 IPR002885 -
Bva07g01727 557 PANTHER OS01G0151900 PROTEIN 81 555 - -
Bva07g01727 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Bva07g01727 557 Gene3D Tetratricopeptide repeat domain 443 556 IPR011990 GO:0005515
Bva07g01727 557 TIGRFAM PPR: pentatricopeptide repeat domain 519 550 IPR002885 -
Bva07g01727 557 TIGRFAM PPR: pentatricopeptide repeat domain 206 234 IPR002885 -
Bva07g01727 557 TIGRFAM PPR: pentatricopeptide repeat domain 379 413 IPR002885 -
Bva07g01727 557 TIGRFAM PPR: pentatricopeptide repeat domain 310 342 IPR002885 -
Bva07g01727 557 TIGRFAM PPR: pentatricopeptide repeat domain 415 449 IPR002885 -
Bva07g01727 557 TIGRFAM PPR: pentatricopeptide repeat domain 344 377 IPR002885 -
Bva07g01727 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Bva07g01727 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Bva07g01727 557 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 81 555 - -
Bva07g01727 557 Gene3D Tetratricopeptide repeat domain 300 370 IPR011990 GO:0005515
Bva07g01727 557 Gene3D Tetratricopeptide repeat domain 371 442 IPR011990 GO:0005515
Bva07g01727 557 Gene3D Tetratricopeptide repeat domain 134 299 IPR011990 GO:0005515
Bva07g01727 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Bva07g01727 557 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 233 IPR002885 -
Bva07g01727 557 Pfam PPR repeat family 306 354 IPR002885 -
Bva07g01727 557 Pfam PPR repeat family 377 425 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01727 Bva-Chr7 16068826 16070499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01727 136 556 Glycosyltransferase AT1G05670 24.299 6.01e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01727 - - pdul:117624936 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01727 07 16068826 16070499 Bva07g01727 07 16068826 16070499 ECH