Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01645 ATGGCGGCTTCGAAATCCATATCTCCCTTCAGGCTCTCCTCCCTCCTCCGCTTGCAGAAGGACCCTGCTTTTGCTTTCAAACTCTTCcgaaaccctaaccctaatcCCAATAAAACTTTCCGCTACCCCCTCCTCTCCTATGATATCATCATCACCAAGCTTGGTCGCGCCAAAATGTTCGATCAAATGGAACAAGTACTACAGCAGCTCAAGAAAGAGACGCGCTTTGTCGTCCCCGAAGTGCTCTTATGCAATGTCATATTATTCTATGGCCGGGCACGCCTCCCTGCGAGTGCCATCCAGACATTCCAGTCCATTCCCTCCTTTCAGTGCGAACGAACcgtaaaatcatttaattcaCTTTTGAATGCGCTTTTGATCTGTAGAGAAtatgagaaaatgagagaaatttaTCTAGGCATTGATGATTTTGGGAGCCCAGATGCTTGTACGTATAATATTCTGATCAATGCTTGTTGCCTAAGAGGGGATATAGAACAAGCATGGAAGGTGTTCGATCAAATGCAGAGGAATGGTATTCGTTCGACTGTGGTGACTTTTGGGACTTTGATTAATGGGTTTTGTTTGAATAATCAGTTGAAAGAGGCTTTACAACTAAAAGAGGATATGATGAGAATTTTCAAGTTGAAACCTAACACCTTTTTGTATACGACATTGCTTAAAGGGCTTTGTAAGATGGGGGATCTTACTTTGGCTTTTGGAATTAAGGATGAGATGGTGAGaaataaagtgattttagATGCTGCTGCTTATAACACTCTGATTGCCGCACTGTTCAAGGCAGGGAGGAAGGAGGAGGCGTTGGGTGTTCTTGAGGAGATGAAAGAGCATGGTTGCAAGCCCAACCCAGCAACTTATAATGTGATGATTAGTGGGTTTTGCAGGGAGAAGGATTTTCAAGAAGCCTACAAGATTTTGAATGGGATGGAAGATTTTAAGCCGAATGTTATGAGTTATAACGTGATGATTGGTTGGTTATGTAAGGAGGGGAAATGGAGTGAAGCAGTTGATTTGTTTCAAGACATGCCAAGACGCAGATGTGCTCCTGATGTGGTAACTTACCGTACACTCTTTGACGGGCTTTGTGAATGGATGCAATTCAAGGAAGCAGCATTTGTTCTTGATGAGATGATTTTTAAGGGCTTTTCACCTGTTTGCATAagtatgaataaatttattgacgGGTTGTGCCGGGAAGGGAATTTTGAGTTGCTATCAGCTGTTTTGACTAGTCTGGCCGGAGGAAATGTTCTCAATGAGGATATCTGCAAAACGGTGGTTTCCATGGTTTGCTTAAAGGAGAAGTCATCGGAAGCCTTTGAGCTTTTTGATACTTTAACAGTGCCTTA 1370 0.4066 MAASKSISPFRLSSLLRLQKDPAFAFKLFRNPNPNPNKTFRYPLLSYDIIITKLGRAKMFDQMEQVLQQLKKETRFVVPEVLLCNVILFYGRARLPASAIQTFQSIPSFQCERTVKSFNSLLNALLICREYEKMREIYLGIDDFGSPDACTYNILINACCLRGDIEQAWKVFDQMQRNGIRSTVVTFGTLINGFCLNNQLKEALQLKEDMMRIFKLKPNTFLYTTLLKGLCKMGDLTLAFGIKDEMVRNKVILDAAAYNTLIAALFKAGRKEEALGVLEEMKEHGCKPNPATYNVMISGFCREKDFQEAYKILNGMEDFKPNVMSYNVMIGWLCKEGKWSEAVDLFQDMPRRRCAPDVVTYRTLFDGLCEWMQFKEAAFVLDEMIFKGFSPVCISMNKFIDGLCREGNFELLSAVLTSLAGGNVLNEDICKTVVSMVCLKEKSSEAFELFDTLTVP 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01645 456 SUPERFAMILY HCP-like 124 345 - -
Bva07g01645 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Bva07g01645 456 PANTHER OS05G0207200 PROTEIN 1 453 - -
Bva07g01645 456 Pfam PPR repeat 216 247 IPR002885 -
Bva07g01645 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Bva07g01645 456 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 453 - -
Bva07g01645 456 TIGRFAM PPR: pentatricopeptide repeat domain 150 181 IPR002885 -
Bva07g01645 456 TIGRFAM PPR: pentatricopeptide repeat domain 325 358 IPR002885 -
Bva07g01645 456 TIGRFAM PPR: pentatricopeptide repeat domain 222 254 IPR002885 -
Bva07g01645 456 TIGRFAM PPR: pentatricopeptide repeat domain 292 318 IPR002885 -
Bva07g01645 456 TIGRFAM PPR: pentatricopeptide repeat domain 257 289 IPR002885 -
Bva07g01645 456 TIGRFAM PPR: pentatricopeptide repeat domain 185 219 IPR002885 -
Bva07g01645 456 TIGRFAM PPR: pentatricopeptide repeat domain 359 391 IPR002885 -
Bva07g01645 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 319 IPR002885 -
Bva07g01645 456 Gene3D Tetratricopeptide repeat domain 198 304 IPR011990 GO:0005515
Bva07g01645 456 Gene3D Tetratricopeptide repeat domain 305 420 IPR011990 GO:0005515
Bva07g01645 456 Gene3D Tetratricopeptide repeat domain 49 197 IPR011990 GO:0005515
Bva07g01645 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Bva07g01645 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 218 IPR002885 -
Bva07g01645 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Bva07g01645 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Bva07g01645 456 Pfam PPR repeat family 147 195 IPR002885 -
Bva07g01645 456 Pfam PPR repeat family 254 302 IPR002885 -
Bva07g01645 456 Pfam PPR repeat family 321 369 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01645 Bva-Chr7 15679162 15681009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g01645 15 453 Glycosyltransferase AT1G05670 26.049 4.55e-39 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01645 - - jre:109012117 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01645 07 15679162 15681009 Bva07g01645 07 15679162 15681009 ECH