Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g01216 ATGGATGGTTATGAAGCTACAAGAATTGTCTTCTCAAGGATCCAAAACATGGACCCTGAAAATGCCTCCAAAATCATGGGTCTACTTCTGATTCAAGACCATGGTGGTAAGGAAATGATTAGATTAGCATTTGGTCCCGAAGCCTTAGTTCACTCAGTGATTGTCAAAGCTAGAAAAGACTTGGGATTGCCCTCCAACTCTCCTTCTACGCCTTCAACTCCTTCATCCCCATCCCCTTTTCTCTCCAGCAATCCAGTTCCTATTTCCAGGCAAAATTCCACTTCTTCCAGGCTTCTGAACACTGGTGGAGTCAACCTTCCACCTGCTCTTAGCATCCCTAACCCTTCCTCTGCTAATTCAGCTTCTTGGGCTACTCTCTCTGACCTTCAAAACCCAGAGGATTTGATGAGCCCCAACAATTTAGTTGTTGGCTCTTCTGCCTCTACAATCaactcttcctcttccttaCCCTTCTATGGAAACGGAGGATCCGACCCAATTGATGAATTTCAACTTCAGGACCAGCTTTCTTTCCTTAATGACGGTTCACCCACCCTTGGACCCAAAAACTCAGATTTGTTTTACCCTCCATCGGACTTGTCTTCTAGTCCTACCGGTGGTGGCGGCGACCCTACTCTCTTTCCGTCGTATGGTTGGGGTGGCTCCCTCCACCGCCGGAGTTATTCTGTCAACGATGCTTGTTTGGGGTCTGAGGACCCAAATTCTGGACTTGGATGGAAGCCTTGCCTTTACTTTGCCAGAGGGTACTGCAAAAATGGAACTAGTTGCAGGTTCCTTCATGGAGGCATGGCAGATTCTGATAGTGCTGCAATGGTTGGGTCCCCTAGCAAGATTGAGATGATGGACCAGTGCCATGAGCTTCTCAGATCTAAAACTGCTCAGGCTCAGCAGCAGAGACTTGCTGCTACTTCTCAGCTCATGGCCTCTTCTTCCTTCCCTTACTCTCCCAAGTGTGTGAATTTTCTACTTCAGCAGCAGCAGAATGATACTCAAAGGGCTGCAGCAGCTTTGATGATGAACGAGGATTTGCACAAATTTGGGCGATCTCGGCTTGAAAGGAATGATTTTTCGTTGAATGGAGGCCCTGGAATGGTGAACCCAGCTTCAAGGCAGATCTACTTGACTTTCCCAGCTGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTTAGCATTTATGGGCCTGTGCAAGATGTGAGGATCCCATATCAGCAGAAGCGCATGTTTGGGTTTGTAACCTTCGTTTATCCAGAGACTGTGAAGCTCATTCTGTCTAAGGGAAACCCTCATTTCGTTTGTGATGCTCGAGTGCTTGTCAAGCCTTACAAGGAAAAGGGCAAAGTTCCAGACAAgaaacagcagcagcagcaacaggTGGATAGGGGAGACTACTCCCCTTGTGGTACCCCCACTGGGCTTGATGCAAGAGACCCATTTGATATCCAACTGGGAGGGAGAATGTACTACAATGCTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCAAGCTCTTGAGCTGCAAAGTAGAAGGTTGATGGGTCTGCAGCTTCTTGACATTAAGAAGCAGCACCATCGAGCACTTTCCACAGGAAGTCCTATTCCTTCCCCAACACACTCTCCAAACATATTTAACCAGAATCTTTGTCTTCCTTCGTTTCACAATGGCCTAGAGGTTCCAGAGGAGAGTGGTTCAAGTTCAGGTCCTGCTAGCACTGCATCAATTCCGGTTGATCCGGCCAATGTTTCTGTTGGCAAAGAAGTGACAGCCAATGGCGAGAATGGAAATAGCGATGGCAACGGCAAGCAGAGCTCCAATCAAGTAGACAGTGATTTGCATGAATGCTTGGAGCATAATCTCCCTGATAGCCCTTTTGCATCCCCTACTAAAGCTGGAAACTATTTGGCTGCCTTTTCCAATGGACCTAGTGATGCTATTGATTCAGATGCCCCAGCTGCATCTGCAAATTCTAAATTTGGTTCTAGCATATTACTTCCAGCTGCATCTGCTCTGGACATGGGGACTTTCAAATCCTTCAATTGCCAATTGCCAAGGTTCTCCTCCGGCCATGGCACCGTTGGAATGTATGCGGGCACCGTAGAAGTTGAACCACAGCTGAAgcagaagcaaagaaaagaagcataTGCAGAAGAGAAAGTGGTAAATGCAGAGTTGTA 2216 0.4589 MDGYEATRIVFSRIQNMDPENASKIMGLLLIQDHGGKEMIRLAFGPEALVHSVIVKARKDLGLPSNSPSTPSTPSSPSPFLSSNPVPISRQNSTSSRLLNTGGVNLPPALSIPNPSSANSASWATLSDLQNPEDLMSPNNLVVGSSASTINSSSSLPFYGNGGSDPIDEFQLQDQLSFLNDGSPTLGPKNSDLFYPPSDLSSSPTGGGGDPTLFPSYGWGGSLHRRSYSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGMADSDSAAMVGSPSKIEMMDQCHELLRSKTAQAQQQRLAATSQLMASSSFPYSPKCVNFLLQQQQNDTQRAAAALMMNEDLHKFGRSRLERNDFSLNGGPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQQQQVDRGDYSPCGTPTGLDARDPFDIQLGGRMYYNAQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKQHHRALSTGSPIPSPTHSPNIFNQNLCLPSFHNGLEVPEESGSSSGPASTASIPVDPANVSVGKEVTANGENGNSDGNGKQSSNQVDSDLHECLEHNLPDSPFASPTKAGNYLAAFSNGPSDAIDSDAPAASANSKFGSSILLPAASALDMGTFKSFNCQLPRFSSGHGTVGMYAGTVEVEPQLKQKQRKEAYAEEKVVNAEL 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g01216 738 Coils Coil 719 738 - -
Bva07g01216 738 MobiDBLite consensus disorder prediction 452 484 - -
Bva07g01216 738 Gene3D - 238 311 - -
Bva07g01216 738 ProSiteProfiles Zinc finger C3H1-type profile. 243 270 IPR000571 GO:0046872
Bva07g01216 738 SMART rrm1_1 378 448 IPR000504 GO:0003723
Bva07g01216 738 SUPERFAMILY RNA-binding domain, RBD 388 474 IPR035979 GO:0003676
Bva07g01216 738 MobiDBLite consensus disorder prediction 572 591 - -
Bva07g01216 738 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 268 IPR000571 GO:0046872
Bva07g01216 738 CDD RRM_AtC3H46_like 379 448 IPR034365 -
Bva07g01216 738 Gene3D - 375 474 IPR012677 -
Bva07g01216 738 SMART c3hfinal6 245 269 IPR000571 GO:0046872
Bva07g01216 738 MobiDBLite consensus disorder prediction 82 102 - -
Bva07g01216 738 MobiDBLite consensus disorder prediction 195 209 - -
Bva07g01216 738 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 389 434 IPR000504 GO:0003723
Bva07g01216 738 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 706 - -
Bva07g01216 738 SUPERFAMILY CCCH zinc finger 246 268 IPR036855 GO:0046872
Bva07g01216 738 MobiDBLite consensus disorder prediction 188 209 - -
Bva07g01216 738 MobiDBLite consensus disorder prediction 64 114 - -
Bva07g01216 738 MobiDBLite consensus disorder prediction 568 622 - -
Bva07g01216 738 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 706 - -
Bva07g01216 738 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 377 453 IPR000504 GO:0003723
Bva07g01216 738 MobiDBLite consensus disorder prediction 600 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g01216 Bva-Chr7 13201092 13205647 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g01216 - - qlo:115983719 1039.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01216 07 13201092 13205647 Bva07g01216 07 13201092 13205647 ECH