Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00426 ATGGAAGATATAGAAGATTTGCTAATTGGGAGCGGAAGCGGATCCCCACCTGGGTTTCGGTTGCCATTAACCTCCGTTGGAGTGAACacaaagagaaatagaaataaagtTAGTCTCACACACAAGCTATCTCAAATCCAAGACTCAACTTCAAAAGTTCCAGGCACACAGGCAATATTTATAAAGACTTTTGGATGCTCTCATAATCAGAGTGATAGTGAATACATGGCTGGTCAGCTTTCAGCTTTTGGTTATACACTTAGTGACAATCCTGATGAAGCAGACCTATGGCTGATTAATACGTGCACAGTTAAATCCCCAAGTCAATCTGCCATGGATACCATAAtatcaaaagggaaaaatttaaataaaccaTTAGTGGTTGCAGGGTGTGTCCCTCAAGGAAGCCGGGACTTGAAAGAGCTAGAAGGAATCAGTATTGTTGGTGTCCAACAAATTGATCGTGTGGTTGAAATTGTGGAAGAGACTTTGAAAGGTCATGAGGTGCGGCTTTTGACCCGTAAGACATTGCCAGCACTTGATCTTCCCAAGGTGAGAAAGAACAAGTTTGTTGAGATTCTTCCTATTAATGTTGGTTGTTTAGGTGCTTGCACTTACTGCAAGACAAAGCATGCTCGTGGTCACCTAGGTAGTTACACAATTGATAGTCTTGTAGGCCGTGTAAGATCTGTCATAGCTGATGGAGTTAAAGAGATATGGCTGAGCAGTGAAGATACTGGAGCATATGGTCGTGATATTGGTGTCAATCTTCCAACTCTATTGCGTGCTCTGGTAGCAGAACTTCCAACTGATGCAAGCACAATGCTTCGAATTGGAATGACCAATCCACCTTTTATACTTGAGCACTTAAGGGAGATAGCAGAAATTTTGCAGCATCCGTGTGTATACTCTTTTCTGCATGTGCCAGTTCAGTCTGGGAGTGACACTATCTTGACTGCAATGAATCGGGAATATACTGTAAGTGAGTTCAGAACTGTCGTAGATACCTTGATGGAGCTTGTGCCGGGGATGCAGATTGCCACTGATATAATATGTGGATTTCCTGgtGAAAGTGATGAAGATTTCAAACAAACTGTCGACCTTATTAACGAGTACAAGTTCCCCCAAGTTCATATCTCACAATTTTATCCTCGACCAGGGACACCTGCTGCAAGGATGAAAAAAGTTCCAAGTAATGTAGTAAAGAGAAGGAGCCGTGAACTGACAAATGTTTTCGAAGCCTTCACACCATATTCCGGAATGGAGGGTAAAGTGGACAGAATTTGGATTACTGATGTTGCATCTGATGGAATTCACTTGGTTGGTCACACCAAGGGATATATACAAGTTCTTGTAGCTGCTCCAGAATCTATGCTGGGAACTTCAGCTTTGGTTAAGATAACATCACTGGGGAGATGGTCAGTTTTTGGGGAAGTGATTGAGACAATCAACCCATTAGTTGATAATAACGCTTCCAATAAGAAGTTGCCTAATCAGGACATGTTTTCTCTCTGTTGCAACCCATCCAAGACTGGTGGATGCTTAGACGAGCCAGAATCTTGTGCTTGTGGAAATGACAGTTGCTGCAGTCAGAGCACTGCGGAGAAAAGTGACATTTCTGTGTTGCCACAGAATCAGAATGGTAGAAATTTCTTTGGTTGGATACTAAGGAAACGAAAGCAACTGTACAGAAGGGTAGAGAGTGAACCAGCCTCAGGATCCATTAAAAGGCAAGAAGGAAGCCTTGAGAGAATGAGTGAATGGAACTTTGTTGACAAGGCTCTTCTGGGTGGAATATTTGCCAGCACCTTCACGATCCTTGTTCTAGCAGTAGCTCTTGTGTTTAGAGCTGTTTGGTCAcatta 1865 0.4177 MEDIEDLLIGSGSGSPPGFRLPLTSVGVNTKRNRNKVSLTHKLSQIQDSTSKVPGTQAIFIKTFGCSHNQSDSEYMAGQLSAFGYTLSDNPDEADLWLINTCTVKSPSQSAMDTIISKGKNLNKPLVVAGCVPQGSRDLKELEGISIVGVQQIDRVVEIVEETLKGHEVRLLTRKTLPALDLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVRSVIADGVKEIWLSSEDTGAYGRDIGVNLPTLLRALVAELPTDASTMLRIGMTNPPFILEHLREIAEILQHPCVYSFLHVPVQSGSDTILTAMNREYTVSEFRTVVDTLMELVPGMQIATDIICGFPGESDEDFKQTVDLINEYKFPQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFEAFTPYSGMEGKVDRIWITDVASDGIHLVGHTKGYIQVLVAAPESMLGTSALVKITSLGRWSVFGEVIETINPLVDNNASNKKLPNQDMFSLCCNPSKTGGCLDEPESCACGNDSCCSQSTAEKSDISVLPQNQNGRNFFGWILRKRKQLYRRVESEPASGSIKRQEGSLERMSEWNFVDKALLGGIFASTFTILVLAVALVFRAVWSH 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00426 621 SMART MiaB 190 414 IPR006638 GO:0003824|GO:0051536
Bva07g00426 621 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 57 165 IPR013848 GO:0035596|GO:0051539
Bva07g00426 621 Pfam Radical SAM superfamily 197 369 IPR007197 GO:0003824|GO:0051536
Bva07g00426 621 Gene3D tm_1862 like domain 188 418 IPR023404 -
Bva07g00426 621 CDD Radical_SAM 194 398 - -
Bva07g00426 621 SUPERFAMILY Radical SAM enzymes 180 414 - -
Bva07g00426 621 TIGRFAM TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 59 475 IPR005839 GO:0006400|GO:0016740|GO:0051539
Bva07g00426 621 ProSitePatterns Methylthiotransferase radical SAM domain signature. 194 214 IPR020612 GO:0051539
Bva07g00426 621 SFLD B12-binding domain containing 135 403 - -
Bva07g00426 621 Pfam Uncharacterized protein family UPF0004 59 137 IPR013848 GO:0035596|GO:0051539
Bva07g00426 621 Gene3D - 58 177 IPR038135 -
Bva07g00426 621 SFLD Radical SAM 135 403 IPR007197 GO:0003824|GO:0051536
Bva07g00426 621 ProSiteProfiles TRAM domain profile. 419 481 IPR002792 -
Bva07g00426 621 TIGRFAM MiaB-like-B: MiaB-like tRNA modifying enzyme, archaeal-type 59 480 IPR006466 GO:0035598|GO:0035600
Bva07g00426 621 ProSiteProfiles Radical SAM core domain profile. 186 419 IPR007197 GO:0003824|GO:0051536
Bva07g00426 621 PANTHER RADICAL SAM PROTEINS 1 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00426 Bva-Chr7 6011736 6022129 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00426 K15865 - gmx:100798865 988.408