Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00380 ATGGCTGACGAAGAATCGAAACCTGCGCCGCCTGTAACAGAGAAAGAAGACCCGTCTCCGCCACAGCCTCCGGCGGAGTCTGATTTACCCACTATAACAACTACTTCAGCTCTTGATTCTGCTGAGAGCAAAGAAGCTCCTCCGCCGCCGGCGTCTGAACCGCCTGTTGCAGAAGCAAATGTAGTTCCGGCGGTGGAAACGCTGGAAGTAGCAGAGAAAGAGCCACCACCTCCGCCGCCGCAAGCAACTGTAGAAGAGACTGATTTACAAGCCAAAAGCTCAGAGGGTGTGGGTTTGGTGGCTCAAGATGAGGGATCGAAGCTGGCCGAAGACAGTAAGATTCCTCAGAATTTGGTTTCATTCAAGGAGGAAAGCAACAAAGTGGCTGATCTCTCTGATTCTGAAAGAAGAGCCCTTGATGAGCTGAAGCAGCAGGTTCGTGAGGCTCTAAACACTCGCCAGTTTGATTTTTCCGCACCCAAAGCATCTGTATCTAATCCAAAATCTGAAGAACGCACTTCAGAATCTGAAAAGAAGCCATCCAATGagacaaaaattgaagaaaacccATCAAAGGAAGCAGAGGAAGTAGCAAAAGAAGCAGCAACCTCAGCAGCATCCGATGAAGTTTCAATCTGGGGAGTTCCTCTGCTCAAAGATGACAGAAGTGATGTGATTCTGCTCAAGTTCCTCCGAGCCCGAGACTTCAAAGTGAAAGATGCGTTTTTGATGCTCAAGAACACAATTCAGTGGAGGAAAGAGTTCAACATCGATGCACTTGTGGATGAAGATCTTGGAGATGATTTGGAAAAAGTGGTCTTCATGCACGGATATGATAGAGAGGGGCATTCTGTATGTTATAATGTTTATGGAGAGTTTCTAAACAAGGAATTATATCAAAAGACATtctcaaatgaagaaaagagaaccAAATTTCTCAGATGGAGGATACAGTTCTTGGAGAGGAGTATTAGGAAGCTGGATTTCAGTCCCGGTGGTGTTTGTACAATTTTCCAAGTTAATGATCTTAAAAATTCTCCGGGACCCGGAAAGAGAGAGCTACGAATTGCCACCAAACAAGCTCTGCAATTGCTTCAGGATAATTATCCTGAATTTGTTGCCAAACAGGTTTTCATCAATGTCCCATGGTGGTATCTTGCATTCTACACCATGATCAGTCCATTCTTGACACAAAGGACCAagagcaaatttttttttgcaggcCCATCAAAGTCTGCTGAGGCACTTTTCAAGTACATCTCTCCTGAGCAAGTTCCAGTTCAGTATGGTGGCCTAAGTGTAGATTACTGCGACTGCAATCCGGAATTCAGCATATCTGACCCAGTCACTGACATTCCTATAAAGCCAACCACAAAGCAAACTGTGGAGATCATTATTTATGAGAAATGTGTTATTGTTTGGGAGCTGCGGGTTCCAGGTTGGGAAGTTAGCTATAGTGCTGAATTCAAGCCTGATGCAAAAGATGGATATACAGTTATTATCCAGAAGGCCACAAAGATGTACCCTAACGATGAACCCGTGGTGTCCAGTAGCTTTAAAGTCGGGGAACTAGGCAAGATATTGCTCACCATTGACAATCCTActacaaaaaagaagaggcTTCTCTATAGGTTCAAGGTCAAACCCTACAGTGACTG 1658 0.4282 MADEESKPAPPVTEKEDPSPPQPPAESDLPTITTTSALDSAESKEAPPPPASEPPVAEANVVPAVETLEVAEKEPPPPPPQATVEETDLQAKSSEGVGLVAQDEGSKLAEDSKIPQNLVSFKEESNKVADLSDSERRALDELKQQVREALNTRQFDFSAPKASVSNPKSEERTSESEKKPSNETKIEENPSKEAEEVAKEAATSAASDEVSIWGVPLLKDDRSDVILLKFLRARDFKVKDAFLMLKNTIQWRKEFNIDALVDEDLGDDLEKVVFMHGYDREGHSVCYNVYGEFLNKELYQKTFSNEEKRTKFLRWRIQFLERSIRKLDFSPGGVCTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMISPFLTQRTKSKFFFAGPSKSAEALFKYISPEQVPVQYGGLSVDYCDCNPEFSISDPVTDIPIKPTTKQTVEIIIYEKCVIVWELRVPGWEVSYSAEFKPDAKDGYTVIIQKATKMYPNDEPVVSSSFKVGELGKILLTIDNPTTKKKRLLYRFKVKPYSD 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00380 552 SMART CRAL_TRIO_N_2 223 248 IPR011074 -
Bva07g00380 552 SUPERFAMILY CRAL/TRIO domain 272 440 IPR036865 -
Bva07g00380 552 SUPERFAMILY CRAL/TRIO N-terminal domain 128 264 IPR036273 -
Bva07g00380 552 MobiDBLite consensus disorder prediction 13 27 - -
Bva07g00380 552 PRINTS Cellular retinaldehyde-binding protein signature 389 408 - -
Bva07g00380 552 PRINTS Cellular retinaldehyde-binding protein signature 226 248 - -
Bva07g00380 552 MobiDBLite consensus disorder prediction 168 199 - -
Bva07g00380 552 Pfam CRAL/TRIO, N-terminal domain 172 247 IPR011074 -
Bva07g00380 552 MobiDBLite consensus disorder prediction 1 134 - -
Bva07g00380 552 MobiDBLite consensus disorder prediction 151 167 - -
Bva07g00380 552 Pfam CRAL/TRIO domain 272 431 IPR001251 -
Bva07g00380 552 ProSiteProfiles GOLD domain profile. 442 547 IPR009038 -
Bva07g00380 552 MobiDBLite consensus disorder prediction 151 202 - -
Bva07g00380 552 Gene3D - 124 463 IPR036865 -
Bva07g00380 552 Coils Coil 132 152 - -
Bva07g00380 552 CDD SEC14 268 432 IPR001251 -
Bva07g00380 552 PANTHER PATELLIN-1 49 552 IPR044834 GO:0008289
Bva07g00380 552 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 262 437 IPR001251 -
Bva07g00380 552 PANTHER PATELLIN-3 49 552 - -
Bva07g00380 552 SMART sec14_4 267 434 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00380 Bva-Chr7 5437935 5440481 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00380 227 426 Acyl Lipid Metabolism Gene Families AT1G55840 27.273 3.64e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00380 - - jre:109000981 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g00380 07 5437935 5440481 Bva07g00380 07 5437935 5440481 ECH