Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva07g00279 ATGGGCAAAGACGAGGAAGAGATGAGGGGAGAGATAGAGGAGAGACTAATCAATGAGGAGTACaagatatggaagaagaatACTCCATTCTTGTACGATTTAGTGATAACCCATGCCCTAGAATGGCCTTCCCTCACCGTAGAGTGGCTGCCAGACCGAGATGAGCCTCCGGGGAAGGATTACTCCGTCCAGAAGATGATTCTGGGTACCCACACCTCGGAGAACGAGCCCAATTACTTGATGCTTGCCCAAGTCCAGCTTCCTTTGGAGGATTCTGAGAATGATGCGCGCCATTATGATGATGATCGGCCTGACGCAGGTGGTTTTGGGAATGCTAATGGCAAGGTACAAATAATCCAGCAAATAAACCATGATGGAGAGGTTAATAGGGCCCGTTATATGCCTCAAAATCCCTTTATTATTGCTACAAAGACAGTTAGTGCTGAAGTCTATGTATTTGATTATAGCAAGCATCCATCTAAGCCTCCTCTAGATGGTGCTTGTAATCCTGATTTAAGATTGAGGGGTCACAATACTGAAGGATATGGTTTATCCTGGAGTAAATTTAAGCAGGGTCATTTACTAAGTGGTTCTGATGATGCTCAAATATGCTTATGGGATATAAATGCAACtgctaaaaataaaaccttgGAGGCTATGCAGATATTTAAGGTTCATGAGGGTGTTGTAGAAGATGTAGCATGGCATTTGAGGCATGAATATTTGTTTGGTTCTGTTGGTGATGATCAATACTTACTTATATGGGATCTTCGGACCCCATCAGTTAGCAAACCTGTGCAGTCTGTAATTGCTCATTTAAGTGAGGTTAACTGCTTGGCTTTCAATCCCTTTAATGAATGGGTTGTCGCAACTGGTTCTACGGATAAAACTGTGAGGTTGTTTGATCTACGGAAGATCAGTACTCCTCTACACACCTTTGATTGCCACAAGGAGGAGGTTTTCCAGGTTGGCTGGAACCCTAAAAATGAGACTATTCTCGCTTCTTGTTGCCTTGGTAGAAGGCTCATGGTCTGGGATCTCAGCAGGATTGATGAAGAGCAGACGCCTGAAGATGCTGAAGATGGTCCACCAGAATTGCTTTTTATTCATGGTGGTCACACCAGTAAAATATCTGACTTCTCTTGGAACCCATGTGAAGATTGGGTTATTGCCAGCGTGGCTGAAGACAACATACTTCAAATATGGCAGATGGCAGAGAACATTTACCATGATGAAGATGATCTGCCAGAAGAGTCAACAAAGGCCACCTA 1271 0.4272 MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLEDSENDARHYDDDRPDAGGFGNANGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHNTEGYGLSWSKFKQGHLLSGSDDAQICLWDINATAKNKTLEAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVSKPVQSVIAHLSEVNCLAFNPFNEWVVATGSTDKTVRLFDLRKISTPLHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVIASVAEDNILQIWQMAENIYHDEDDLPEESTKAT 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva07g00279 423 ProSitePatterns Trp-Asp (WD) repeats signature. 194 208 IPR019775 -
Bva07g00279 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 355 IPR001680 GO:0005515
Bva07g00279 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 370 404 IPR001680 GO:0005515
Bva07g00279 423 Pfam WD domain, G-beta repeat 264 302 IPR001680 GO:0005515
Bva07g00279 423 Pfam WD domain, G-beta repeat 308 346 IPR001680 GO:0005515
Bva07g00279 423 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Bva07g00279 423 Pfam WD domain, G-beta repeat 367 402 IPR001680 GO:0005515
Bva07g00279 423 PRINTS G protein beta WD-40 repeat signature 194 208 IPR020472 -
Bva07g00279 423 PRINTS G protein beta WD-40 repeat signature 390 404 IPR020472 -
Bva07g00279 423 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Bva07g00279 423 PANTHER WD40 REPEAT FAMILY 1 417 - -
Bva07g00279 423 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 19 88 IPR022052 -
Bva07g00279 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 216 IPR001680 GO:0005515
Bva07g00279 423 PANTHER BNAA10G29210D PROTEIN 1 417 - -
Bva07g00279 423 SUPERFAMILY WD40 repeat-like 114 408 IPR036322 GO:0005515
Bva07g00279 423 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 304 IPR001680 GO:0005515
Bva07g00279 423 Gene3D - 2 422 IPR015943 GO:0005515
Bva07g00279 423 SMART WD40_4 363 403 IPR001680 GO:0005515
Bva07g00279 423 SMART WD40_4 216 256 IPR001680 GO:0005515
Bva07g00279 423 SMART WD40_4 115 154 IPR001680 GO:0005515
Bva07g00279 423 SMART WD40_4 262 302 IPR001680 GO:0005515
Bva07g00279 423 SMART WD40_4 306 346 IPR001680 GO:0005515
Bva07g00279 423 SMART WD40_4 167 207 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva07g00279 Bva-Chr7 3991608 3997814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva07g00279 220 411 Miscellaneous Gene Families AT5G08390 22.280 2.11e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva07g00279 K10752 - csv:101222849 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g00279 07 3991608 3997814 Bva07g00279 07 3991608 3997814 ECH