Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03045 ATGGCGACTCCGATGGCTTCCTTGCGATCCAACTTTCACTCCCCTTTTCTCCcagcatcatcatcatctgcTTCTTGCTCTTGTGGTTCTCCTTCTACTGTCCCTCTACTGGGTTCGGCTAAATCAACTTTCTTATGCCCATCTCAAAGACTGAAATGCACTCCTGCCGTCACACCCAGGAGTAACCGTGCCACTTCACTCGTTGTTCGTATGTCATGGGACGAACCCCTCTCTTCGGTTAAATTGATCGTACAAGGAAAACATTTACAGTTGACTGGTGCGGTTAAGCAGCATGTGGAAGAGAAAGTTGGGAAGGCAGTTCAGAAGCACAGTCACTTAGTTAGGGAGGTTGATGTGAGGTTATCAGCCCGAGGAGGAGAGTTTGGGAGAGGACCCAGAACCAGCAGATGTGAGGTAACTTTGTATACCAAGAGGCATGGAGTGGTGCGGGCTGAGGAAGATGCTGAGACTCTCTATGGGAGTATAGACTTGGCATCTTCAATTGTTCAGAGAAAGTTGAGAAAGATAAAGGAAAAGGAGTCAGACCATGGTCGCCACATGAAGGGGTTCAACAGATTGAGAGATAAGGAGACCACTCTGGAACTACCTAAGGACGAGATAAAAATACCTcctgaagaggaagaagaatttatCAGTGAGGTTGTCCGCACAAAATACTTTGAAATGGTACCATTGACTGAATCTGAAGCAATAGAGCAGCTCGAAAATGTTGATCATGACTTCTATGCttttcgaaatgaagaaactgGGGAGGTTAATATTgtatacaaaagaaaagcagGAGGTTATGGAGTCATCATACCCAAAGAAGATGGTAAAACTGAGACGTTAGAGCCTGTGATGCTTGAACCAGCTAGAGAACCCTCCCTTGCAGAATG 899 0.4227 MATPMASLRSNFHSPFLPASSSSASCSCGSPSTVPLLGSAKSTFLCPSQRLKCTPAVTPRSNRATSLVVRMSWDEPLSSVKLIVQGKHLQLTGAVKQHVEEKVGKAVQKHSHLVREVDVRLSARGGEFGRGPRTSRCEVTLYTKRHGVVRAEEDAETLYGSIDLASSIVQRKLRKIKEKESDHGRHMKGFNRLRDKETTLELPKDEIKIPPEEEEEFISEVVRTKYFEMVPLTESEAIEQLENVDHDFYAFRNEETGEVNIVYKRKAGGYGVIIPKEDGKTETLEPVMLEPAREPSLAE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03045 299 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 83 179 IPR003489 GO:0044238
Bva06g03045 299 PANTHER 30S RIBOSOMAL PROTEIN 65 279 - -
Bva06g03045 299 Gene3D - 81 191 IPR036567 -
Bva06g03045 299 TIGRFAM yfiA: ribosomal subunit interface protein 81 184 IPR003489 GO:0044238
Bva06g03045 299 CDD RaiA 81 179 IPR003489 GO:0044238
Bva06g03045 299 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 81 186 IPR036567 -
Bva06g03045 299 Gene3D - 231 282 IPR038416 -
Bva06g03045 299 Hamap Ribosome hibernation promoting factor [hpf]. 80 276 IPR034694 -
Bva06g03045 299 PANTHER 30S RIBOSOMAL PROTEIN 65 279 - -
Bva06g03045 299 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 219 272 IPR032528 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03045 Bva-Chr6 18871874 18873929 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03045 - - cpap:110823153 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g03045 06 18871874 18873929 Bva06g03045 06 18871874 18873929 ECH