Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g03003 ATGTCGGACGCGTATTGGAGATACGGCGACTCACGGTCGTCGGTGATTCCCCCGATCGCTGGAAAGCGCTCGCGTACCGACTACGATGTCTCTGGTGGTCATGACTTGGCCAATTACTATCCCCGCGATGATGATAGAGGAGGTCTCCGAGTAATTAGAGATACTGAATCCCTTGAAGCATCCTATGAGCGTTATCTACGTAGTGCGCAAGTTCCATCTTATGGTGCGGGACAGTCTACTAGAACCATTGGTGGGGGACTTCCCACTCATTCTATTGATGATTCACGTGCTGTGAGTCTTGGGGGAGTGGACCCAGGAACAACGATAAAGGACAAGACACTAGGGTTAAGCAGTGGAAGGTCTGATCGTCCCCTTCCTCCTGATGCTACTAGTACATTGTTTGTGGAGGGTTTGCCTTCTAACTGTACAAGACGGGAAGTAGCTCATATATTTCGTCCTTTTGTTGGCTACAAAGAAGTCAGACTTGTTAGCAAGGAATCAAGACAgCCTGGGGGTGATCCGCTGGTGCtttgttttgttgattttgcGAGTCCAGCCCATGCCGCAACTGCAATGGAAGCCCTGCAGGGTTACAAATTTGACGAGCTTGACCGCAACTCGGTCAATTTAAGGTTCCAATTTGCTCGCCATCCTGGTGCAAGATCAGGAGGCGGGCATCGTGGCAAGCGATG 692 0.4957 MSDAYWRYGDSRSSVIPPIAGKRSRTDYDVSGGHDLANYYPRDDDRGGLRVIRDTESLEASYERYLRSAQVPSYGAGQSTRTIGGGLPTHSIDDSRAVSLGGVDPGTTIKDKTLGLSSGRSDRPLPPDATSTLFVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLVLCFVDFASPAHAATAMEALQGYKFDELDRNSVNLRFQFARHPGARSGGGHRGKR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g03003 230 CDD RRM_RBPMS_like 131 211 - -
Bva06g03003 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 201 IPR000504 GO:0003723
Bva06g03003 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 217 IPR000504 GO:0003723
Bva06g03003 230 SMART rrm1_1 132 206 IPR000504 GO:0003723
Bva06g03003 230 Gene3D - 127 218 IPR012677 -
Bva06g03003 230 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 18 230 - -
Bva06g03003 230 PANTHER PROTEIN MATERNALLY EXPRESSED GENE 5 18 230 - -
Bva06g03003 230 SUPERFAMILY RNA-binding domain, RBD 117 223 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g03003 Bva-Chr6 18680844 18686244 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g03003 - - gmx:100786188 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g03003 06 18680844 18686244 Bva06g03003 06 18680844 18686244 ECH