Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02990 ATGGAGAGGTCTAGATCTAAGAGGAACTACTACTATGACCAAGACTATGATTCAGAGACCTTGGCTAGGACCAGACCTCGCTATAACCACCACTACTCCAGTAACACCCACCGTCACCgtggcggcggcggcggcggagGTGGTGGGAGACCTTCTAAGGCTCAAGATTTGTCTCTAATGGTGACCACAAGTTACCGCATTTTGTGCCATGATATGAAGGCTGGTGGTGTGATTGGCAAATCGGGTAATATTATAAAGTCCATTAGGCAACACACCGGCGCGTGGATCAACGTCCACGAGCTGATCCCCGGCGACGAGGAACGAATCATTGAGATTTCGGACACGCGTCGGCGTGATCCAGAAGGCCGAATGCCGTCGTTCTCACCGGCGCAGGAGGCCTTGTTGTTGATTCATGAAAGGATTCTTGAGAGCGACGCTGCGTTTGGGATTGGCGATGAGGAGGAGGAGTATGGGGGCAGAGGTGGGAGCAATCGTGTGGCTACTAGACTGGTGGTGTCCAGAATGCATGTTGGGTGTTTGTTGGGAAAAGGAGGGAAGATAATTGAACAAATGAGGATGGATACCAAGACTCAAATTAGGATACTCCCTAGAGATCACAATCTTCCTCGTTGTGTCTCAATGTCGGAGGAAATTGTTCAGGTTGTTGGTGATGTAAATGCTGTAAAGAATGCTTTAGCTATTATATCATCTCGCCTGAGGGAGAGCCAGCATCGGGACCGCAGTCATTTCCATGGACGAGTACATTCACCGGAGCGTTTTTTCCCTCCTGATGATGATTATAACCCTCATGTGACTGGTGCAGCTCGTCGATCATCTATGGATGGGACAAATTTTGGTTCACGACTATCAGCTTCCAATGTCAGAAGCAATAACTATCACTCATTAAGTTTTGACTTGGAACCAGGGGCAGCTCCTTTGGCTGATGATGCAAAGCCCCTTTATGGTGAGGACCTTGTTTTCCGAATACTTTGTCCAGTTGACCAAGTTGATCGTATAATTGGGGAATCAGATGGAATAGTAGAATTTCTTCAGGATGAAGTTGGGGTAGATGTTAAGGTCACTGATCCTCTGGTTGATTCAGATGAAcagataattattatttcttctgaTGAGGGGCCTGATGATGAGTTGTTCCCAGCTCAGGAAGCTTTGTTGCACATTCAAACTCGTATCGTAGACCTTGTTCTAGATAAGGACAACATTATAACTACCAGGCTCGTTGTTCCATCGAGTGATATTCAATGTTTAGAAGGGAAAGATGCATCACTTTCAGAAATGAGGAGATTAACTGGCGCAGAAATACAAATTCTGCCTAGAGAACAACTACCTCTCTGTGTTGCAAAAACTGATGAGCTGGTTCAGATTGTAGGTGAGATAAAAGCTGCTAGAGATGCCGTTGTTGAGGTGACATCAAGACTAAGAAGTTATCTATATAGGGATTTCTTTCTAAAGGACACAGCACCACCAGCTCCCTCTTTACCTTGCTCAGAATCATCTTCATCCAATAATACAGCTCCACTTCATGAGGGTTATACAGGCAATGGAACTCCTGCAACATATCAGAATGTGCAAACTGTGACGGCACCTCTTGCATCGAAGGAGACTGGAGGATCTGGCGGTGAAACAGGAAAGCAGAAAGAAAGTGACCGCCATGATGATGTGCCAAGTGGTTTAAATAGGATCCCTCTACCACTTGTCACTAGGAGTACACTTGAAGTTGTCTTACCAGAGTATGCAGTTCCAAAGCTTATAGCAAAATCAAAAAGCAAGCTTGCTCAAATAAGTGAGTTATCAGGAGCCAATGTAACCCTCGTGGAAGATAGACCGGATGCGACCCAGAAGATCATTCAAATATCTGGTACACCAGAACAGGCAGAGCGAGCCCAGAGCTTGCTCCAGGGATTTATCTTGAGCACACAAGAAGATGGTCCCTA 1955 0.4486 MERSRSKRNYYYDQDYDSETLARTRPRYNHHYSSNTHRHRGGGGGGGGGRPSKAQDLSLMVTTSYRILCHDMKAGGVIGKSGNIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGIGDEEEEYGGRGGSNRVATRLVVSRMHVGCLLGKGGKIIEQMRMDTKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNALAIISSRLRESQHRDRSHFHGRVHSPERFFPPDDDYNPHVTGAARRSSMDGTNFGSRLSASNVRSNNYHSLSFDLEPGAAPLADDAKPLYGEDLVFRILCPVDQVDRIIGESDGIVEFLQDEVGVDVKVTDPLVDSDEQIIIISSDEGPDDELFPAQEALLHIQTRIVDLVLDKDNIITTRLVVPSSDIQCLEGKDASLSEMRRLTGAEIQILPREQLPLCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFLKDTAPPAPSLPCSESSSSNNTAPLHEGYTGNGTPATYQNVQTVTAPLASKETGGSGGETGKQKESDRHDDVPSGLNRIPLPLVTRSTLEVVLPEYAVPKLIAKSKSKLAQISELSGANVTLVEDRPDATQKIIQISGTPEQAERAQSLLQGFILSTQEDGP 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02990 651 MobiDBLite consensus disorder prediction 22 54 - -
Bva06g02990 651 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 320 377 IPR036612 GO:0003723
Bva06g02990 651 MobiDBLite consensus disorder prediction 497 522 - -
Bva06g02990 651 ProSiteProfiles Type-1 KH domain profile. 575 639 - -
Bva06g02990 651 Gene3D K Homology domain, type 1 162 244 IPR036612 GO:0003723
Bva06g02990 651 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 162 246 IPR036612 GO:0003723
Bva06g02990 651 CDD PCBP_like_KH 64 138 - -
Bva06g02990 651 CDD PCBP_like_KH 169 236 - -
Bva06g02990 651 Gene3D K Homology domain, type 1 61 144 IPR036612 GO:0003723
Bva06g02990 651 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 401 489 IPR036612 GO:0003723
Bva06g02990 651 ProSiteProfiles Type-1 KH domain profile. 62 134 - -
Bva06g02990 651 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 57 114 IPR036612 GO:0003723
Bva06g02990 651 Gene3D K Homology domain, type 1 574 646 IPR036612 GO:0003723
Bva06g02990 651 ProSiteProfiles Type-1 KH domain profile. 324 391 - -
Bva06g02990 651 CDD KH-I 577 640 - -
Bva06g02990 651 Pfam KH domain 65 113 IPR004088 GO:0003723
Bva06g02990 651 Pfam KH domain 577 640 IPR004088 GO:0003723
Bva06g02990 651 Pfam KH domain 168 236 IPR004088 GO:0003723
Bva06g02990 651 MobiDBLite consensus disorder prediction 499 522 - -
Bva06g02990 651 ProSiteProfiles Type-1 KH domain profile. 165 235 - -
Bva06g02990 651 MobiDBLite consensus disorder prediction 536 567 - -
Bva06g02990 651 Gene3D - 323 484 - -
Bva06g02990 651 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 545 - -
Bva06g02990 651 SMART kh_6 61 142 IPR004087 GO:0003676
Bva06g02990 651 SMART kh_6 164 240 IPR004087 GO:0003676
Bva06g02990 651 SMART kh_6 574 644 IPR004087 GO:0003676
Bva06g02990 651 SMART kh_6 407 481 IPR004087 GO:0003676
Bva06g02990 651 SMART kh_6 323 396 IPR004087 GO:0003676
Bva06g02990 651 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 568 645 IPR036612 GO:0003723
Bva06g02990 651 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02990 Bva-Chr6 18620793 18621461 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02990 K21444 - gmx:100804167 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02990 06 18620793 18621461 Bva06g02990 06 18620793 18621461 ECH