Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02953 ATGGGAGTTGTGACTGTATCTAGCTCAGCTGCTCGGACTCCAATAGGGTTAACcaacaaattttcaagttatcGGCATGTACCAACAAGACTCGTTATTATAGCATTTAAAGGAGATAAACCCAACAATATAACTTTGGTTACTCCTCAAGAGCAAATTCCTCTACCCATTGGAACAGCAAAGCAGCGCCCAAAAAGAATACGAAAAAGCATTAAACTCTTTACGGATGAAGTTTCTTCATCCACTTTGGATGTGGATTACAATGAAGCTGCTGCCaaacttgaaaatatatacaaactcAGCCCCGCATCTGATACGAGTAATACAGAGCAGATAGATGGTTTAATCAAACGAGTGTCACGAAGAAGGGAGAAGATTGGTGATGATAATAAAGGTGGGGAGTTAAATAGTGATGACGGTGTAGTTAGAAACCATAAAAAGAAGCCCAAGCGGTTGAGTCTTGATACGAGGATTGCTttgaaaaaggacaaaaaggaGGAGGTGGTTGTTCCAACacgaaagaaaagaaatgttaaGACTAGAATTGAGAAGATTGATGAGCTTGTCAGGGAATATTCAGCATCAACCGATCTAGTCAGCCTGGActggaaaaaaatgaagataccACCAGTTCTTCCTCCTTCAGAGCATACTTGGTTGTTCAAATTAATGCAGCCTATGAAGGCACTCCTTCGTGTGAAAGAAGATCTACAGAAGGAGCTGGGGAGAGAACCCACAGAGGGCGAGCTAGCTGATGCAACATCTATGAGCATTGTTCAAGTAAGGAGAGCAATTGAAATTGGTCGAGCTGCAAGAAACAAGCTGATTAAGCACAATCTTCGGCTTGTCATATTTGTGatcaacaaatattttcaagatttttcaaATGGTCCGAAGTTCCAAGACATTTGTCAGGCAGGAGTTCAGGGACTTATCACTGCTATTGATCGTTTTGAGCCAAAGAGGAAATTTCGGCTTTCCACTTATGGTCTGTTTTGGATAAGACATGCCATTGCTCGTTCCATGACCCTCTCAAGCTTCACTCGCGTACCCTTTGGTCTTGAATCGGTTAGAGTAGATATTCAAAGAGCTAAGCTCGAGTTAACATTTGAGCTTCAGAGATTACCGACAGAGGAAGAGATAATAGAAAGAGTTGGGATCTCTCCTGAAAGATACCATGAAGTAATGAAGGCCGCAAAGCCTGTTCTTTCCCTTCATTCAAGGCATGCAATCACACAAGAGGAGATTATTGCTGGGGTCACTGATGTTGATGGCAATAACAGAAGGAAACCTGCTCTTCTTAGGCTTGCTCTTGATGATGTGCTTGATTCCCTGAAGCCAAAGGAGAGCTTGGTGATCAGACAGAGATATGGACTTGATGGTAAGGGTGACAGAACATTGGGAGAAATCGCTGGGAACTTGAATATTTCGAGGGAAATGGTAAGGAAGTATGAAGTAAAGGCTCTCTTGAAGCTTAAGCATCCAGCTCGGATGGATTATCTTCGTCGTCATGTTGTATA 1520 0.3967 MGVVTVSSSAARTPIGLTNKFSSYRHVPTRLVIIAFKGDKPNNITLVTPQEQIPLPIGTAKQRPKRIRKSIKLFTDEVSSSTLDVDYNEAAAKLENIYKLSPASDTSNTEQIDGLIKRVSRRREKIGDDNKGGELNSDDGVVRNHKKKPKRLSLDTRIALKKDKKEEVVVPTRKKRNVKTRIEKIDELVREYSASTDLVSLDWKKMKIPPVLPPSEHTWLFKLMQPMKALLRVKEDLQKELGREPTEGELADATSMSIVQVRRAIEIGRAARNKLIKHNLRLVIFVINKYFQDFSNGPKFQDICQAGVQGLITAIDRFEPKRKFRLSTYGLFWIRHAIARSMTLSSFTRVPFGLESVRVDIQRAKLELTFELQRLPTEEEIIERVGISPERYHEVMKAAKPVLSLHSRHAITQEEIIAGVTDVDGNNRRKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALLKLKHPARMDYLRRHVV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02953 506 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 506 - -
Bva06g02953 506 Pfam Sigma-70 region 2 275 340 IPR007627 GO:0003700|GO:0006352|GO:0006355
Bva06g02953 506 Gene3D - 429 506 IPR036388 -
Bva06g02953 506 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 271 494 IPR014284 GO:0003700|GO:0006352|GO:0006355
Bva06g02953 506 PRINTS Major sigma-70 factor signature 481 492 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva06g02953 506 PRINTS Major sigma-70 factor signature 326 334 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva06g02953 506 PRINTS Major sigma-70 factor signature 466 481 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva06g02953 506 PRINTS Major sigma-70 factor signature 302 315 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva06g02953 506 PRINTS Major sigma-70 factor signature 445 457 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva06g02953 506 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 350 407 IPR013324 -
Bva06g02953 506 Pfam Sigma-70, region 4 441 494 IPR007630 GO:0003700|GO:0006352|GO:0006355
Bva06g02953 506 Gene3D - 266 343 - -
Bva06g02953 506 Pfam Sigma-70 region 3 359 416 IPR007624 GO:0003700|GO:0006352|GO:0006355
Bva06g02953 506 Pfam Sigma-70 region 3 230 270 IPR007624 GO:0003700|GO:0006352|GO:0006355
Bva06g02953 506 CDD Sigma70_r4 435 493 - -
Bva06g02953 506 Gene3D - 348 400 IPR036388 -
Bva06g02953 506 Gene3D - 222 265 IPR036388 -
Bva06g02953 506 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 193 342 IPR013325 GO:0003700|GO:0006352|GO:0006355
Bva06g02953 506 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 506 - -
Bva06g02953 506 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 433 502 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02953 Bva-Chr6 18381154 18384766 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02953 K03093 - jre:109004224 727.628