Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02923 ATGCCGCGCCATGGAATGGACCCCGATGACGAGGAGTACGAAGACGAACAACTTATGGACGACGAAGAAGTGGAGCAGGacgaggaggaggaggaagatgGAGGAAGGTCCAGCAGGAAGCGGAGAAGATCTTCTTTCATAGATGACGATGCCGAAGAGGTTGACGAGGATGAggaggatgatgatgatgatgaatatGATGGTAGAGGGGATCGAAGGCGCTCCAACAAGAGGTCGGCTGCAAGGAACTTCTTCGATGAGGAGGCGATTGTGGATAGCgatgaagaagaggaagaagaaggggGCGACGATGACTTCATTGTTGACCCTGAATCTGAGCTACCAGAGGAAGATGTTGGTGGAAGAATGCGTAGTGCAAGAGGTATAATGCCGCATGAACAAGAGGACCATGAAGATCTTGAAGCAATGGCAAGAAGCATTCAGGAAAGATATGGAAGGCGCATCGCAGACTATGATGAAGAAGCTACAGATGTAGAACAGCAAGCCCTTTTGCCATCAGTGAGAGATCCAAAGTTGTGGATGGTGAAATGTGCGATTGGTCGTGAGCGAGAGGTAGCTGTTTGTCTAATGCAAAAGTGCATTGATAAAGGAGCTGAAATGCAAATCAGGTCAGCTATTGCTCTGGACCATctcaaaaactatatatatattgaagcaGATAAAGAAGCCCATGTGAGAGAGGCTTGTAAAGGTCTGCGCAATATATATGCCCAAAAAATAACTCTTGTTCCCATCAAGGAAATGACAGATGTTCTGTCAGTTGAAAGCAAGGCTATTGATCTTTCTAGAGATACTTGGGTCAGAATGAAGATTGGAACATATAAAGGGGATCTGGCCAAAGTAGTGGATGTGGATAATGTTCGGCAGAGGGTCACTGTGAAATTAATTCCAAGGATAGACTTACAGGCCCTTGCAAACAAATTGGAAGGGAGAGAAGTTGTGAAAAAGAAGGCATTTGTTCCGCCTCCTAGGTTTATGAATGTTGATGAAGCTAGGGAATTGCATATCCGTGTAGAGCATAAGCGCGACCCCATGACTGGGGAACGCTTTGAGACCATTGGAGGGATGATGTTTAAAGATGGTCTCTTGTACAAAACCGTATCAATAAAATCCCTCAGTGCTCAGAATATCAAACCGACTTTTGATGAGCTTGATAAGTTTCGTAACCCTGGTGAGGATAAAGATGGTGACCTAGCAAGTCTGTCAACTTTATTTGCAAACAGAAAGAAAGGTCATTTTTTGAAAGGTGATGCTGTCATCGTCATCAAGGGAGATCTAAAGAACTTGAAGGGATGGGTAGAGAAAGTGGATGAAGAGAATGTTTATATAAGGCCAGAAATCAAAGGTCTCCCTAAAACTCTTGCTGTAAATGAAAAGGAACTCTGCAAATACTTTGAACCCGGAAACCATGTTAAGGTTGTTTCTGGCGCACAAGAAGGTGCTACTGGTATGGTTGTGAAGGTGGAGCAGCATGTGCTTATCATATTATCTGACACAACAAAGGAACATATCCGTGTATTTGCTGATGATGTTGTGGAGAGTTCTGAAGTAACCACTGGAGTTACAAGAATTGGGGACTATGAACTTCATGATCTTGTGTTGCTAGATAATATGAGCTTTGGGGTAATAATACGTGTTGAAAGTGAGGCATTTCAGGTTCTTAAGGGTGTTCCTGACAGACCTGAAGTTGCACTTGTTAAACTAAGGGAAATCAAATGCAAACTAGATAAGAAAATTAGTGTGCAGGATAGGTTTAAGAATACAGTATCTGCGAAGGATGTTGTGAGGATTGTTGAGGGTCCCTGCAGAGGTAAACAAGGTCCTGTGGAGCACATATACAGAGGAGTCTTGTTTATCTATGATCGCCATCATCTTGAACATGCAGGCTTCATATGTGCTAAAGCCCAATCATGTGTGGTAGTGGGAGGTTCACGCTCTAATGGTGACAGAAATGGTGATGCCTATTCAAGATTCCCCAGCCTTAGAACTCCACCTCGTATCCCACAGTCCCCCAGGAGGTTTTCTCGAGGAGGATCACCAAATGATTTTGGAGGAAGGCATAGGGGTGGAAGAGGGCATGATGGTTTGGCTGGTGCAACAGTTAAAGTACGACAGGGTCCCTATAAAGGCTACCGAGGGCGTGTTATAGAAGTTAAAGGAACATCAGTTCGGGTTGAATTGGAGTCACAAATGAAGGTTGTGACAGTTGATCGCAATCATATATCTGATAATGTGGCTGTTTCCACCCCATATCGTGACACACCTCGATATGGAATGGGAAGTGAAACCCCAATGCATCCATCTCGAACACCAATACATCCATATATGACTCCTATGAGGGATCCTGGAGCAACACCTATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCTTATACACCAATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCTGGCTCTTGGGGGACCAGTCCAGGGACCAGTCCACAATATCAGCCTGGAAGTCCTCCTTCACGGCCATATGAAGCTCCAACACCTGGTACTGGTTGGGCTAGCACTCCTGGTGGCAATTATAGTGAAGCTGGTACACCACGGGATAGTAATGCCTATGCAAATGTTCCAAGCCCATATTTACCATCGACACCTGGTGGACAGCCTATGACTCCAAACACAGCATCGTATCTCCCTGGAACCCCAGGAGGGCAGCCTATGACTCCAGGAACAGGTGGTCTGGACATGATGTCCCCGGTTATAGGTGGGGACAGCGAAGGCCCGTGGTTTATGCCGGATATATTGGTCAATGTACGCAGGTCAGGGGAGGATCCTGTTGTGGGGATTGTAAGAGAGGTTCTTCCGGATGGTTCTTGCAGGGTCCTTGGGTCAAGTGGGAACGGTGAAACGATAACCGCCCTTCCAAGTGAGATGGAGGCTGTGGTACCAAGAAAATCTGACAAAATAAAGATCATGGGTGGTTCATTGCGTGGTGCCACAGGAAAGTTAATTGGTGTAGATGGTACTGATGGCATTGTAAAAGTAGATGACACGCTGGATGTCAAGATTTTAGACTTGGATATTTTGGCAAAACTAGCTCAACCGTG 3119 0.4428 MPRHGMDPDDEEYEDEQLMDDEEVEQDEEEEEDGGRSSRKRRRSSFIDDDAEEVDEDEEDDDDDEYDGRGDRRRSNKRSAARNFFDEEAIVDSDEEEEEEGGDDDFIVDPESELPEEDVGGRMRSARGIMPHEQEDHEDLEAMARSIQERYGRRIADYDEEATDVEQQALLPSVRDPKLWMVKCAIGREREVAVCLMQKCIDKGAEMQIRSAIALDHLKNYIYIEADKEAHVREACKGLRNIYAQKITLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHKRDPMTGERFETIGGMMFKDGLLYKTVSIKSLSAQNIKPTFDELDKFRNPGEDKDGDLASLSTLFANRKKGHFLKGDAVIVIKGDLKNLKGWVEKVDEENVYIRPEIKGLPKTLAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKLDKKISVQDRFKNTVSAKDVVRIVEGPCRGKQGPVEHIYRGVLFIYDRHHLEHAGFICAKAQSCVVVGGSRSNGDRNGDAYSRFPSLRTPPRIPQSPRRFSRGGSPNDFGGRHRGGRGHDGLAGATVKVRQGPYKGYRGRVIEVKGTSVRVELESQMKVVTVDRNHISDNVAVSTPYRDTPRYGMGSETPMHPSRTPIHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPGTSPQYQPGSPPSRPYEAPTPGTGWASTPGGNYSEAGTPRDSNAYANVPSPYLPSTPGGQPMTPNTASYLPGTPGGQPMTPGTGGLDMMSPVIGGDSEGPWFMPDILVNVRRSGEDPVVGIVREVLPDGSCRVLGSSGNGETITALPSEMEAVVPRKSDKIKIMGGSLRGATGKLIGVDGTDGIVKVDDTLDVKILDLDILAKLAQP 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02923 1039 CDD NGN_Euk 178 260 IPR039385 -
Bva06g02923 1039 SMART kow_9 419 446 IPR005824 -
Bva06g02923 1039 SMART kow_9 595 622 IPR005824 -
Bva06g02923 1039 SMART kow_9 267 294 IPR005824 -
Bva06g02923 1039 SMART kow_9 701 728 IPR005824 -
Bva06g02923 1039 SMART kow_9 986 1013 IPR005824 -
Bva06g02923 1039 SMART kow_9 471 498 IPR005824 -
Bva06g02923 1039 Gene3D - 158 260 IPR036735 GO:0006355
Bva06g02923 1039 MobiDBLite consensus disorder prediction 791 918 - -
Bva06g02923 1039 CDD KOW_Spt5_3 471 521 IPR041976 -
Bva06g02923 1039 CDD KOW_Spt5_2 420 470 IPR041975 -
Bva06g02923 1039 Gene3D - 474 523 IPR014722 -
Bva06g02923 1039 MobiDBLite consensus disorder prediction 89 114 - -
Bva06g02923 1039 SUPERFAMILY Translation proteins SH3-like domain 463 522 IPR008991 -
Bva06g02923 1039 MobiDBLite consensus disorder prediction 891 905 - -
Bva06g02923 1039 CDD KOW_Spt5_5 703 749 IPR041978 -
Bva06g02923 1039 Pfam KOW motif 705 734 IPR005824 -
Bva06g02923 1039 Pfam KOW motif 474 501 IPR005824 -
Bva06g02923 1039 MobiDBLite consensus disorder prediction 33 49 - -
Bva06g02923 1039 CDD KOW_Spt5_4 599 641 IPR041977 -
Bva06g02923 1039 Pfam Early transcription elongation factor of RNA pol II, NGN section 178 259 IPR005100 -
Bva06g02923 1039 ProSitePatterns Ribosomal protein L24 signature. 423 440 IPR005825 GO:0003735|GO:0005840|GO:0006412
Bva06g02923 1039 CDD KOW_Spt5_1 271 308 IPR041973 -
Bva06g02923 1039 MobiDBLite consensus disorder prediction 755 778 - -
Bva06g02923 1039 SMART nusgn_4 176 262 IPR006645 GO:0140673
Bva06g02923 1039 SUPERFAMILY Translation proteins SH3-like domain 412 450 IPR008991 -
Bva06g02923 1039 MobiDBLite consensus disorder prediction 67 88 - -
Bva06g02923 1039 Pfam Spt5 transcription elongation factor, acidic N-terminal 84 172 IPR022581 -
Bva06g02923 1039 Gene3D - 685 751 IPR014722 -
Bva06g02923 1039 MobiDBLite consensus disorder prediction 1 119 - -
Bva06g02923 1039 PANTHER SUPPRESSOR OF TY 5 22 1037 IPR039659 GO:0006357|GO:0032784
Bva06g02923 1039 MobiDBLite consensus disorder prediction 9 32 - -
Bva06g02923 1039 MobiDBLite consensus disorder prediction 50 66 - -
Bva06g02923 1039 Gene3D - 267 309 IPR014722 -
Bva06g02923 1039 MobiDBLite consensus disorder prediction 857 882 - -
Bva06g02923 1039 CDD KOW_Spt5_6 980 1037 IPR041980 -
Bva06g02923 1039 PIRSF Spt5 5 1039 IPR017071 GO:0006357|GO:0032784
Bva06g02923 1039 MobiDBLite consensus disorder prediction 653 705 - -
Bva06g02923 1039 Gene3D - 414 471 IPR014722 -
Bva06g02923 1039 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 22 1037 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02923 Bva-Chr6 18233697 18240708 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02923 K15172 - gmx:100801380 1672.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02923 06 18233697 18240708 Bva06g02923 06 18233697 18240708 ECH