Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02921 ATGAGGATAGCTAGGATACTGAGGTTGCAACGACACCCACAACAGTTTATTGCATTTCGTCAATCAATGATACCACTTGAACCTCAATATTACCAAATTGTCTGCTTCTCGCACCCTGCAAAACTCGAACAAATCTCTCAGCTTTGCACCAGTAGGAGCTTCCTGAATCCTCCAAGTGGGTATTACCTTATAAGGAACTACATTGACCAAAGATCATTCAGAGAAGCACTTGTTTTGTACAAACAAATTAGCCTTGCAGGATCCTATGAATTGAGTATAGTCCCTTTGTTATTCAAGGCTTgtgcttctctttctttccttgaaTATGGGAAGGCTTTGCATGCGGAGGCCATTAAGGCCGGTTCAGACGGTGATGTGATGATTGGAACCTCATTGATTAGTGCTTATGCAAAGTGCGGGGTTGTTCTTGATTCCCGCAAGCTGTTTGAAACTATGCCTGAGAGAAACGTTGTTACCTGGAATGCCATGATTAATGGGTACTTTAGAAATGGAGATACAATATCTGCTTCTCTTCTGTTTGATAAGATGCCTGGGCGAACAGAAGTAACTTGGGTTCAGATGATCGATGGGTTTGCAAGGAATGGGGATACAGTCACTGCTAGGCGAATGTTTGATATGGTTCCAACTGAGTTGATGAATGTGGTAACATGGACTGTGATGGTTGATGGGTATGCTAGACATGGGGAGGTGGAAGCTGCCAGAGAGATCTTTGAGCAGATGCCAGAGCGGAATTTCTTTGTGTGGTCATCCATGATTTCTGGGTACTGCAAGAAGGGCAATGTCAGAGAGGCCAAGGCCTTGTTTGATCGGACCACATTCAGGAATTTAGAGATTTGGAATTCCATGATTTCTGGGTACGTCCAGAATGGATTTGGTGAGGAAGCACTTAAAGCATTTCATGAAATGGAAGCTGAGGGGTTTGAGCCAGATGAGTTTACTGTAGTTAGTATTCTATCTGCTTGTTCTCAGCTGGGGCGTCTGGATGCTGGTAAAGAAATCCACCATATGACAAAACGTAAAAAGATAAGGATGAGTCCATTTATTTTGAGTGGATTAATTAACATGTATGCACAATGCGGGGACTTAATCAATGCAAGATTGATCTTTGAAGAGTTCAATGACAGGAACATCTACTGCTGGAATGCTATGTTATCAGGTTTTGCCATCAATAGAAAATGCCACGAGGTTCTTGAATTATTTCGCAGAATGGAGGATTCGAACGTAAGCCCTGATGGTATAACCTTTCTTACTCTACTCTCAGCTTGTGCTCATGGGGGTTTTGTCAATGAAGCTTTGGAAGTAATATCCAAAATGGAGACATGCGGGTTGGAAATAGGCATCAAACATTATGGATGCATGGTTGACCTTTTGGGGCGGGCAGGTAGATTAAAAGAGGCTTACgaattaacaaaaagaatgcCAATGAAACCTAATGACACTATTTTGGGGGCATTGCTTGGTGCTTGTCGTATTCATTCGGATATGAAAATGGCAGAGCAAGTAATGCAGGAGTTCAGAGCACAAAATCTGGACAGTGTTTCTGGTGGTAATTCTCGTTATGTGCTTATGTCAAACATCTATGCAGCTTCTGAAACATGGGAGAAAGCTGAAAGGATGAGGATGGTCAACACAAATGGAGGGTCTCATAAGACACCTGGGTGTAGTTCAGTCATGTTTAGCGGGCTCTG 1709 0.4184 MRIARILRLQRHPQQFIAFRQSMIPLEPQYYQIVCFSHPAKLEQISQLCTSRSFLNPPSGYYLIRNYIDQRSFREALVLYKQISLAGSYELSIVPLLFKACASLSFLEYGKALHAEAIKAGSDGDVMIGTSLISAYAKCGVVLDSRKLFETMPERNVVTWNAMINGYFRNGDTISASLLFDKMPGRTEVTWVQMIDGFARNGDTVTARRMFDMVPTELMNVVTWTVMVDGYARHGEVEAAREIFEQMPERNFFVWSSMISGYCKKGNVREAKALFDRTTFRNLEIWNSMISGYVQNGFGEEALKAFHEMEAEGFEPDEFTVVSILSACSQLGRLDAGKEIHHMTKRKKIRMSPFILSGLINMYAQCGDLINARLIFEEFNDRNIYCWNAMLSGFAINRKCHEVLELFRRMEDSNVSPDGITFLTLLSACAHGGFVNEALEVISKMETCGLEIGIKHYGCMVDLLGRAGRLKEAYELTKRMPMKPNDTILGALLGACRIHSDMKMAEQVMQEFRAQNLDSVSGGNSRYVLMSNIYAASETWEKAERMRMVNTNGGSHKTPGCSSVMFSGL 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02921 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Bva06g02921 569 Pfam PPR repeat 158 184 IPR002885 -
Bva06g02921 569 Pfam PPR repeat 254 277 IPR002885 -
Bva06g02921 569 Pfam PPR repeat 222 252 IPR002885 -
Bva06g02921 569 Pfam PPR repeat 457 481 IPR002885 -
Bva06g02921 569 Pfam PPR repeat 189 213 IPR002885 -
Bva06g02921 569 Pfam PPR repeat 130 157 IPR002885 -
Bva06g02921 569 TIGRFAM PPR: pentatricopeptide repeat domain 254 277 IPR002885 -
Bva06g02921 569 TIGRFAM PPR: pentatricopeptide repeat domain 158 183 IPR002885 -
Bva06g02921 569 TIGRFAM PPR: pentatricopeptide repeat domain 420 451 IPR002885 -
Bva06g02921 569 TIGRFAM PPR: pentatricopeptide repeat domain 285 318 IPR002885 -
Bva06g02921 569 TIGRFAM PPR: pentatricopeptide repeat domain 385 418 IPR002885 -
Bva06g02921 569 TIGRFAM PPR: pentatricopeptide repeat domain 222 252 IPR002885 -
Bva06g02921 569 TIGRFAM PPR: pentatricopeptide repeat domain 189 213 IPR002885 -
Bva06g02921 569 PANTHER OS01G0913400 PROTEIN-RELATED 61 564 - -
Bva06g02921 569 Gene3D Tetratricopeptide repeat domain 356 567 IPR011990 GO:0005515
Bva06g02921 569 PANTHER BNACNNG13520D PROTEIN 61 564 - -
Bva06g02921 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 186 IPR002885 -
Bva06g02921 569 Pfam E motif 499 564 IPR046848 -
Bva06g02921 569 SUPERFAMILY TPR-like 112 277 IPR011990 GO:0005515
Bva06g02921 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Bva06g02921 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Bva06g02921 569 Pfam PPR repeat family 283 328 IPR002885 -
Bva06g02921 569 Pfam PPR repeat family 383 430 IPR002885 -
Bva06g02921 569 Gene3D Tetratricopeptide repeat domain 184 251 IPR011990 GO:0005515
Bva06g02921 569 Gene3D Tetratricopeptide repeat domain 252 355 IPR011990 GO:0005515
Bva06g02921 569 Gene3D Tetratricopeptide repeat domain 62 183 IPR011990 GO:0005515
Bva06g02921 569 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02921 Bva-Chr6 18226757 18228466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02921 74 562 Glycoside Hydrolase AT3G49170 28.911 1.50e-58 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02921 - - gmx:100802813 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02921 06 18226757 18228466 Bva06g02921 06 18226757 18228466 ECH