Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva06g02908 | ATGATGGTTGCTGGCTGCGGTGGTAGTGGCAATAACAACAAAGGAGTGAAAATGGTTATCATTGAGTGGAAGGACATCCCGGTGGAGCTTTTAATGCAAATTCTGTCGCTAGTGGATGATCAGACGGTGATCTCTGCTTCTGGAGTCTGTCGTGGGTGGAGAGATGCTATTTGCTTTGGTCTGACCCGTTTATCCCTCTCATGGTGTAGCAAGAATATGAATGAGTTGGTCCTAGCACTTGCTCCTAAATTCACAAAGTTGCAAACTCTAATACTTCGTCAAGACAAGCCTCAACTAGAGGACATTGCTGTTGAGACTATTGCAAATTACTGTCCCGACCTGCAGATCCTTGATCTCAGCAAAAGCTTCAAGCTTACTGATCGGTCACTATACGCCCTGGCCCATGGTTGTCCTGATCTTACAAAACTTAACATCAGTGGCTGTTCAGCATTTAGTGACCATGCTCTGGCTTACTTAGCCAGTTGCTGTAGAAAATTGAAGGCTTTAAATCTTTGTGGATGTGTTAAAGCTGCATCTGATACTGCATTGCAGGCTATTGGACGTTTCTGCAATCACTTGCAGTCTCTGAGTCTTGGATGGTGTGATAATGTAGGTGATATTGGAGTGATGAATTTAGCAGCTGGCTGCCCAGATCTTAGAACACTTGACTTGTGTGGCTGTGTCCGCATAACAGATGATAGTGTAATTGCTATGGCTAACAGATGTCCTCATCTGCGGTCCCTTGGGCTATACTACTGCCAAAACATCACGGACAGGGCAATGTATTCTTTGGCACACAGCAAAGTGAATCATAGGATGTGGGGATCTGTGAAAGGTGGAAACGATGAAGATGGACTAAGAACTCTCAACATCAGCCAATGTACAGCACTGACCCCTTCTGCTGTTCAGGCAGTCTGTGATTCATTCCCAGCACTTCATACCTGCTCGGGAAGGCACTCACTCATCATGAGTGGCTGTTTGAATTTGACGACTGTGCATTGTGTCTGTGCTTTCCATGCACACCGTCCCTTTAGCACTCTTCCTCATCCAGCTCATTG | 1058 | 0.4575 | MMVAGCGGSGNNNKGVKMVIIEWKDIPVELLMQILSLVDDQTVISASGVCRGWRDAICFGLTRLSLSWCSKNMNELVLALAPKFTKLQTLILRQDKPQLEDIAVETIANYCPDLQILDLSKSFKLTDRSLYALAHGCPDLTKLNISGCSAFSDHALAYLASCCRKLKALNLCGCVKAASDTALQAIGRFCNHLQSLSLGWCDNVGDIGVMNLAAGCPDLRTLDLCGCVRITDDSVIAMANRCPHLRSLGLYYCQNITDRAMYSLAHSKVNHRMWGSVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLNLTTVHCVCAFHAHRPFSTLPHPAH | 352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva06g02908 | 352 | SMART | LRR_CC_2 | 283 | 308 | IPR006553 | - | |
| Bva06g02908 | 352 | SMART | LRR_CC_2 | 190 | 215 | IPR006553 | - | |
| Bva06g02908 | 352 | SMART | LRR_CC_2 | 163 | 189 | IPR006553 | - | |
| Bva06g02908 | 352 | SMART | LRR_CC_2 | 242 | 267 | IPR006553 | - | |
| Bva06g02908 | 352 | SMART | LRR_CC_2 | 111 | 136 | IPR006553 | - | |
| Bva06g02908 | 352 | SMART | LRR_CC_2 | 216 | 241 | IPR006553 | - | |
| Bva06g02908 | 352 | SMART | LRR_CC_2 | 137 | 162 | IPR006553 | - | |
| Bva06g02908 | 352 | SMART | LRR_CC_2 | 84 | 110 | IPR006553 | - | |
| Bva06g02908 | 352 | SMART | LRR_CC_2 | 58 | 83 | IPR006553 | - | |
| Bva06g02908 | 352 | SUPERFAMILY | F-box domain | 23 | 62 | IPR036047 | GO:0005515 | |
| Bva06g02908 | 352 | Gene3D | - | 22 | 56 | - | - | |
| Bva06g02908 | 352 | PANTHER | F-BOX SKP2A-LIKE PROTEIN | 1 | 334 | - | - | |
| Bva06g02908 | 352 | Pfam | F-box-like | 24 | 57 | IPR001810 | GO:0005515 | |
| Bva06g02908 | 352 | Pfam | Leucine Rich repeat | 190 | 213 | IPR001611 | GO:0005515 | |
| Bva06g02908 | 352 | Pfam | Leucine Rich repeat | 242 | 265 | IPR001611 | GO:0005515 | |
| Bva06g02908 | 352 | Pfam | Leucine Rich repeat | 216 | 239 | IPR001611 | GO:0005515 | |
| Bva06g02908 | 352 | PANTHER | UNCHARACTERIZED | 1 | 334 | - | - | |
| Bva06g02908 | 352 | Gene3D | Ribonuclease Inhibitor | 57 | 274 | IPR032675 | - | |
| Bva06g02908 | 352 | SUPERFAMILY | RNI-like | 58 | 266 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bva06g02908 | Bva-Chr6 | 18158768 | 18162027 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva06g02908 | K03875 | - | gmx:100818928 | 613.224 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva06g02908 | 06 | 18158768 | 18162027 | Bva06g02908 | 06 | 18158768 | 18162027 | ECH |