Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02904 ATGTACCCATTTTTAAAGCAAAGACAAGTTCTTCATAGTACGCTCTCCTATTACTCTATTGTCCTGGACTACTGTTTGTCTGCAAAATCTCTTGAACTCACCAAAACTGTTCACGCCCAGTTGATAAAATTGGGTTTTAATACCTACACTTATTTAGGAAATCGCTGTCTCAATTTCTACTCGGAGTTTGGTTTCGTTGGTGACGCTTTGAAAGTGTTTGATGATATTAGTCTCAAGAATTCTACATCCTGCAACTTGTGCTTGAAAGGGTTACTGAAAAGTGGTCACCTTGAGAACGCACGCCATTTGTTTGATGGAATGCCTGCTAGAGATGTTGTTAGTTGGAACTCGATGATTTCGGGCTATGCTTCATATGGGCTTGCTGATCATGCCTTGGGTCTTTTTCTTGAGATGCAAAATGCTGGCGTGAGACCAAGTGGGTTCACTTTCTCCATTCTAATGTCATTTGTGTCCAGTCCCAGTCATGGTAAACAAATTCATGGTAGGATGATTAGAAGTGGTATGGATTTATCAAATGTAGTACTTGggaattcattaattaatatgtatgGGAAGTTTGGTCTTGTTGATTGTGCTTTCGGTGTGATTTTAACTATGAAAGAGTTGGATATTATATCTTGGAATTCTTTGATCTGGGCCTGCCATAGAGCAGGACAACAAGAGTTGGCACTAGAGCAGTTCTATCATATGAGAGCTACAGAGTTATTACCTGACCAGTTTACATGTTCAACATTGATCAGTGTCTGTTCTAATTTGCAAGATTTGGAAAAGGGTAAGGAAATTTTTGCTTTCTGTTTCAAGGTGGGAATCGTTTATAATAGCATTGTTTCAAGTGCTGCTATTGATCTCTTTGCAAAATGCAACAGATTGGAGGATTCTGTCCAGCTCTTCAGAGAACAATATCAATGGGATTTAACTCTATGCAATTCCATGATTTCAAGCTATGCTAGACATGGTCTACTAGAAGATGCGCTGCAACTTTTTATACTGACCATGAGGAAAAATCTCAGGCCAACTGAATACACGGTTAGCTGTATTCTGAGTTGtgtttccattttgttttcgGTAGAAATGGGTACTCAAGTCCATTCTTTGGTTCCTAAATTAGGTTTTGAGTCAGATGCCATTGTTGCCAATTCACTTGTTGAAATGTATGcaaaatttggatttattgGTGATGCCCTTAACATctacaatgaaataaaaagcagAGATTTGATATCATGGAACACCATAATGATGGGACTGGCTCACAATGGCAGAGTGTTTATGACCTTGGACCTTTTTAAGGAATTAATCAGGGAAGGTACTACACCAGATCGAATAACATTTTCTGCAGTTCTACTAGCATGCAACCATGGGAGTTTGATTGATGAGGGAACGGAAATCTTTTCTTCAATGGAGAAGGAATTTGGAGTTAAACCTGAGGAAGAACATTATGCTTTCATTGTGGAGTTATTGAGTAGAGCTGGTATGATCAAAGAGGCTATTGACATCGTGGAAACAATGCCTTATAAAACTAGTGCTGTTATTTGGAGATCGATTCTTTCGGCATGTGCAATTCATGGAGAGTTAGGAGTCACTGAGAGAGTTGCGAAGGAAATGATGGAAATAGAACCTCAATCACCTTTACCTTACTTGGTTTTGTTTCGTGCATATCAGATGAGAGGTAGATGGGAGAGTATGGTTCGAGTAAGGAAGGTTATAGGGCATAAAGGTGCCAAGCAGATCATAGGATGCAGTTGGATTGGGATCAAAAACTTTGTGTACGCGTTTAAGTCAGATCAATTACACCATCATGGTGGCAAAGATGTTTACCAGGTATTGAAGTTACTGATCTGGGAAATGGAGACTGAAGGTTATCTCTG 1889 0.3801 MYPFLKQRQVLHSTLSYYSIVLDYCLSAKSLELTKTVHAQLIKLGFNTYTYLGNRCLNFYSEFGFVGDALKVFDDISLKNSTSCNLCLKGLLKSGHLENARHLFDGMPARDVVSWNSMISGYASYGLADHALGLFLEMQNAGVRPSGFTFSILMSFVSSPSHGKQIHGRMIRSGMDLSNVVLGNSLINMYGKFGLVDCAFGVILTMKELDIISWNSLIWACHRAGQQELALEQFYHMRATELLPDQFTCSTLISVCSNLQDLEKGKEIFAFCFKVGIVYNSIVSSAAIDLFAKCNRLEDSVQLFREQYQWDLTLCNSMISSYARHGLLEDALQLFILTMRKNLRPTEYTVSCILSCVSILFSVEMGTQVHSLVPKLGFESDAIVANSLVEMYAKFGFIGDALNIYNEIKSRDLISWNTIMMGLAHNGRVFMTLDLFKELIREGTTPDRITFSAVLLACNHGSLIDEGTEIFSSMEKEFGVKPEEEHYAFIVELLSRAGMIKEAIDIVETMPYKTSAVIWRSILSACAIHGELGVTERVAKEMMEIEPQSPLPYLVLFRAYQMRGRWESMVRVRKVIGHKGAKQIIGCSWIGIKNFVYAFKSDQLHHHGGKDVYQVLKLLIWEMETEGYL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02904 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Bva06g02904 629 Pfam Pentatricopeptide repeat domain 208 257 IPR002885 -
Bva06g02904 629 Pfam E motif 529 590 IPR046848 -
Bva06g02904 629 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Bva06g02904 629 TIGRFAM PPR: pentatricopeptide repeat domain 414 447 IPR002885 -
Bva06g02904 629 TIGRFAM PPR: pentatricopeptide repeat domain 315 346 IPR002885 -
Bva06g02904 629 Gene3D Tetratricopeptide repeat domain 163 266 IPR011990 GO:0005515
Bva06g02904 629 Gene3D Tetratricopeptide repeat domain 364 463 IPR011990 GO:0005515
Bva06g02904 629 Gene3D Tetratricopeptide repeat domain 52 162 IPR011990 GO:0005515
Bva06g02904 629 PANTHER OS03G0435200 PROTEIN 1 628 - -
Bva06g02904 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Bva06g02904 629 Gene3D Tetratricopeptide repeat domain 464 611 IPR011990 GO:0005515
Bva06g02904 629 Gene3D Tetratricopeptide repeat domain 267 363 IPR011990 GO:0005515
Bva06g02904 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Bva06g02904 629 PANTHER OS07G0578800 PROTEIN-RELATED 1 628 IPR045215 GO:0003723|GO:0009451
Bva06g02904 629 Pfam PPR repeat 315 337 IPR002885 -
Bva06g02904 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Bva06g02904 629 Pfam PPR repeat family 110 155 IPR002885 -
Bva06g02904 629 Pfam PPR repeat family 412 458 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02904 Bva-Chr6 18136816 18138354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02904 18 629 Glycoside Hydrolase AT3G49170 29.226 1.30e-95 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02904 - - gmx:100819993 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02904 06 18136816 18138354 Bva06g02904 06 18136816 18138354 ECH