Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02903 ATGGAGATTGATTTGCATGCCCTGGCTCGCATGCTTCACTCTGGCAACACCAATTGCTCCATTCATATGGGGAGACAACTCCATCTGGCATTCTTCAAAAAGGGTATTCTAAATTCCACACTTTCAATCGGAAACCGTCTTTTGCAAATGTACTCCAGGTGTGGTAGCATGAAAGACGCTTGTAAATTGTTTGACGAAATGCCTAATAGAAACTGTTTCTCCTGGAGCACCATGATTGAAGGGTATATGAAGTCAGGTTACAAGGACAAATCGCTTGAGTTGTTTGATATTATGCCTCAGAAGAATGATTACTCGTGGAATGCGGTGGTTTCTGGATTTGCAAAGGCTGGCCAGCTAGAGATAGCTCATTCCTTGTTCAATGCTATGCCTAAAAGAAATGAGTTGGTGTGGAATTCGATGATTCATGGTTATGTTCGAAATGGGAAGCCTAGTAAAGCACTAACgctttttaagaatttgaattCAGACCCACTAGAAGTAATGCACCGGGATACATTCATATTGGCGACTGTTCTTGGGGCGTGTACTGATTTGTCAGTTCTAAGTTGCGGGAAACAAATTCATGCACGCATTTTGATTGATGGTTTGGAATTTGACTCTGTCCTATGTAGTTCgctgattaatttatatggaAAATGTGGTGATTTGGATAGTGCAGATAGGGTTGTGAATATTATGAACGAACCAGATGACTTCTCTCTATCAGCTCTAATATCAGGTTTTGCAAATGCTGGTAGAATGAGTGAAGCAAGAAGAGTTTTTGAAAGCAAAGTTAATCCATGCCGCGTGTTGTggaattcaattatttcaGGATACATATCTAATGGTGAGGAACTAGAAGCACTTGCTGTTTTCAACAAAATGCGCAGAAAGGGGATTCAGGAAGATGCCTCTACAGTCGCTAATATTTTGAGTGCTGGCAGTAGCTTACTGATTATTGAACTCATTAAGCAAATGCATGGCCATGCTTGTAAAGTTGGGGTAACTGATGACATGGTTGTTGCTAGTGCTCTGCTTGACGCGTACTCCAAGTGTGAAAGCCCTTATGATGCTTGCAAATTGTTTAGTGAGCTCAAAGCTTATGATACGATTTTGCTTAATACTATGATCACTGTATATTTCAATTGTGGAAGAATTGAAGATGCAAAATGGATATTTAAGACAATGCCAAGTAAAACCTTAATATCATGGAACTCAATGCTGGTGGGCCTTACTAAGAATGCTTGTCCAAGTGAAGCATTGGTTATTTTTTGTCAGATGAATGAGCTGGACTTAAAAATGGATGAGTTTAGCCTCGCCAGTGCGATCAGTGCTTGTGCCAGTACATCATTCCTTGAACTTGGCGAGCAGGTATTTGGAAATGCTATTACCATCGGGCTTGAATCCAATCAAATCTTCTCTACCTCCCTTATTGATTTTTACTGTAAATGCGGTTTTGTTGAGATAGGGCGTAAAGTTTTTGATAGAACGATAAAAACTGATGAAGTCTCTTGGAATACAATGTTGATGGGATATGCGACAAATGGATATGGAATTGAAGCACTGAGCCTTTTCAGTGAAATGAGACATGCTGGTGTGAGGCCTTCTGGTATTACTTTCACTGGGGTTCTTTCAGCTTGTGATCATAGTGGTCTGGTCGAAGAGGGAAGAAACTGGTTTCATGCTATGAAACATAACTATAACATAGATCCAGGTATTGAACATTACTCTTGCTTGGTCGATCTTTTTGCCCGTGCTTGTTGCTTTGAGGAAGCAGTTAATCTTATTGAAGAGATGCCCTTTGAGGCTGATGGAAGCATGTGGTCATCAGTATTGAGAGGCTGCATAGCCCATGGAAATAGGACTCTCGGCAAGAAGATTGCTGAGCGAATTCTTGAGCTTGATCCCGGAAATCCTAGTGCCTATGTACAATTATCTAACATACTTGCAACATCCGAGGATTGGGAAGGATCAGAACAAGTAAGAAAGTTGATGAGGGATAAAAATGTTCAGAAGAATCCCGGTTGCAGTTGGGCAGATTGTTG 2045 0.4005 MEIDLHALARMLHSGNTNCSIHMGRQLHLAFFKKGILNSTLSIGNRLLQMYSRCGSMKDACKLFDEMPNRNCFSWSTMIEGYMKSGYKDKSLELFDIMPQKNDYSWNAVVSGFAKAGQLEIAHSLFNAMPKRNELVWNSMIHGYVRNGKPSKALTLFKNLNSDPLEVMHRDTFILATVLGACTDLSVLSCGKQIHARILIDGLEFDSVLCSSLINLYGKCGDLDSADRVVNIMNEPDDFSLSALISGFANAGRMSEARRVFESKVNPCRVLWNSIISGYISNGEELEALAVFNKMRRKGIQEDASTVANILSAGSSLLIIELIKQMHGHACKVGVTDDMVVASALLDAYSKCESPYDACKLFSELKAYDTILLNTMITVYFNCGRIEDAKWIFKTMPSKTLISWNSMLVGLTKNACPSEALVIFCQMNELDLKMDEFSLASAISACASTSFLELGEQVFGNAITIGLESNQIFSTSLIDFYCKCGFVEIGRKVFDRTIKTDEVSWNTMLMGYATNGYGIEALSLFSEMRHAGVRPSGITFTGVLSACDHSGLVEEGRNWFHAMKHNYNIDPGIEHYSCLVDLFARACCFEEAVNLIEEMPFEADGSMWSSVLRGCIAHGNRTLGKKIAERILELDPGNPSAYVQLSNILATSEDWEGSEQVRKLMRDKNVQKNPGCSWADC 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02903 681 Gene3D Tetratricopeptide repeat domain 100 164 IPR011990 GO:0005515
Bva06g02903 681 PANTHER OS03G0849700 PROTEIN 169 681 - -
Bva06g02903 681 Pfam PPR repeat 45 72 IPR002885 -
Bva06g02903 681 Pfam PPR repeat 240 262 IPR002885 -
Bva06g02903 681 Pfam PPR repeat 73 102 IPR002885 -
Bva06g02903 681 Pfam PPR repeat 270 300 IPR002885 -
Bva06g02903 681 Pfam PPR repeat 374 399 IPR002885 -
Bva06g02903 681 Pfam PPR repeat 343 366 IPR002885 -
Bva06g02903 681 Pfam PPR repeat 104 133 IPR002885 -
Bva06g02903 681 Pfam PPR repeat 575 599 IPR002885 -
Bva06g02903 681 Pfam PPR repeat 136 159 IPR002885 -
Bva06g02903 681 Pfam PPR repeat 475 496 IPR002885 -
Bva06g02903 681 Pfam PPR repeat 209 233 IPR002885 -
Bva06g02903 681 Pfam PPR repeat 402 430 IPR002885 -
Bva06g02903 681 TIGRFAM PPR: pentatricopeptide repeat domain 136 159 IPR002885 -
Bva06g02903 681 TIGRFAM PPR: pentatricopeptide repeat domain 503 536 IPR002885 -
Bva06g02903 681 TIGRFAM PPR: pentatricopeptide repeat domain 402 435 IPR002885 -
Bva06g02903 681 TIGRFAM PPR: pentatricopeptide repeat domain 104 133 IPR002885 -
Bva06g02903 681 TIGRFAM PPR: pentatricopeptide repeat domain 270 300 IPR002885 -
Bva06g02903 681 TIGRFAM PPR: pentatricopeptide repeat domain 46 72 IPR002885 -
Bva06g02903 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Bva06g02903 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 102 132 IPR002885 -
Bva06g02903 681 Pfam PPR repeat family 501 547 IPR002885 -
Bva06g02903 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Bva06g02903 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 101 IPR002885 -
Bva06g02903 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Bva06g02903 681 Gene3D Tetratricopeptide repeat domain 5 99 IPR011990 GO:0005515
Bva06g02903 681 Gene3D Tetratricopeptide repeat domain 318 473 IPR011990 GO:0005515
Bva06g02903 681 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Bva06g02903 681 Pfam E motif 618 678 IPR046848 -
Bva06g02903 681 PANTHER OS07G0578800 PROTEIN-RELATED 6 102 IPR045215 GO:0003723|GO:0009451
Bva06g02903 681 PANTHER OS07G0578800 PROTEIN-RELATED 113 165 IPR045215 GO:0003723|GO:0009451
Bva06g02903 681 Gene3D Tetratricopeptide repeat domain 495 681 IPR011990 GO:0005515
Bva06g02903 681 Gene3D Tetratricopeptide repeat domain 165 317 IPR011990 GO:0005515
Bva06g02903 681 PANTHER OS07G0578800 PROTEIN-RELATED 169 681 IPR045215 GO:0003723|GO:0009451
Bva06g02903 681 PANTHER OS03G0849700 PROTEIN 6 102 - -
Bva06g02903 681 PANTHER OS03G0849700 PROTEIN 113 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02903 Bva-Chr6 18133142 18135918 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02903 21 680 Glycoside Hydrolase AT3G49170 29.320 8.56e-100 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02903 - - gmx:100790756 1001.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02903 06 18133142 18135918 Bva06g02903 06 18133142 18135918 ECH