Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02902 ATGGGAGTAACTAGTGCCGCCTCTGTACTCAACAAACTTGTTCGCAGCCGAAATCGCAATCCCCAAGCTGAAGCTACCAGCGTCGAGGCCGTAATCAATACAATTAATGCTAACCTCAAAGCGGGTCGCCTTCAAAAGGCTATTTCCGTCCTCTTTGCTTTTCCTCAACCTTTCCCCTACTCTCTCTATGCACGTCTCTTCCAGATTTGTTCCTCGCGTCGCGCCATTGTCGAGGCCCGCAAGGTCGAGTCCCATTTGGTTACCTTCTCTCCTGCTCCTCCAATCTTTCTTCTCAACCGTGCTATTGAAACGTATGGTAAATGCGGTTATCTAAATGATGCCAGGGAGTTGTTCGAGGAAATGCCTCAAAGAGATGGGGGCTCCTGGAATGCAATTATCTCAGCCTATACCCGCGGGGATTTTCCAGGGGAGGCATTGGCATTATTTCTGTGTATGCATAGGTCGGGTGTTCGTGCAAATGAGATCACATTTGCCAGCGTTCTTGGTTCTTGTGCTGCAGCACTTGAGCTTCATCTCTCTGGGCAAATCCACGGGCTTGTCACCAAATTTGGTTTTTGTGGCAATGTAATATTGGGGAGCTCCCTCGTTGATGTCTATGCTAAATGCCGTGTTATGAGTGATGCCTGCAAAATGTTTGATGAGATCAGGTATCCAAATGCCATCACTTGGAATGTGATTGTAAGGCGGTATCTTGATATTGGTGATGGAAAGAAGGCCCTTTTCATGTTTTCGCGGATGTTCTCCTCTGCAATCAAGCCATTGAATTTTACATTCTCTAATGCTCTGGTTGCGTGTTCTAGTATATCTGCACTCAAGGAGGGGTTGCAAATACATGGAGTGGTTACTAAATTAGGTTTCCTCGaggataatattatttcaaccTCTCTTATTAACATGCTTGTCAAGTGTGGTAAACTAGATGACGCTTACAGGGTTTTTGATCAGCTTGGTTCGAAAGACCTGTTCTCTTGGACTTCAATTGTGTCAGGATATGCGGTGAGTGGGAAAACTCGGGAGGCAAGAAAGCTTTTCGATGAGATGCCTGAACGAAATGTGATCTCATGGAATGCAATGTTGGCGGGATATACCCGTTACTTTGAATGGTTAGAGGCATTTGATTTTGTACACCAGATGCTTGATGCAACTGAAGATGTCGATCATGTCAGTCTTTCTCTGATCTTAAATGTCTCTGCTGGACTTTCAGATCATGAAATGGGGAAGCAGGTTCATGGCTATGTTTATCGACATGGTTACCACTCCAACCTTATGGTTGGCAATGCCCTTCTTGACATGTACGGTAAATGCGGGAACTTGAATAGTGCCAGAGTTTGGTTCAACCAAATGAGCAATTGGCGTGACATGGTTTCTTGGAATGCTCTATTGTCTAGTTATTCTCATCATCATTTAAGTGAGCAAACAATGACAACATTTTCGGAGATGCAGTGGGAGACAATACCCACTAAATATACCTTTGGAACACTTTTGGCAGCCTGTGCAAATGCCTTTGCACTTGACCATGGCAAACAAATTCATGGATTTATGATTGCAAATGGACACGAGATAGATACTGTGATCAGAACTGCTTTGATTTACATGTACTCTAGATGTCGTTGTCTTGATTATGCTTTTGAGGTTCTCAAAGGGGCAGCTTTCAGAGATGTGATTCTTTGGAATACCATGATTATGGGATGTTGTCACAATCGTAGGGGTAAAGAAGCGCTGGAACTGTTTGGGATAATGAAAGAGGAAGCCATCAAACCAGATCATGTGACTCTCCAGGGTGTTTTGCTTGCTTGTGTAGAAGAAGGCCTTATCGAAGTTGGTGCCAGATACTTTGAGTCAATGAGCGCCGAGTACTCTGTCCTGCCACGGCTGGAGCACTATGAGTGCATGATTGAACTCTACAGTCGGCATGGATGCATGGATGAACTTGAGAATTTTATCAAGACAATGCCAATAGAACCCACTATTCCGATGTTGACCAGGGCGCTTGAAGCTTGTAAGAAACATAAGTACACAAGATTGGGAGAATGGATCATGCAACAAATTAATGATTTCAAACATTG 2087 0.4379 MGVTSAASVLNKLVRSRNRNPQAEATSVEAVINTINANLKAGRLQKAISVLFAFPQPFPYSLYARLFQICSSRRAIVEARKVESHLVTFSPAPPIFLLNRAIETYGKCGYLNDARELFEEMPQRDGGSWNAIISAYTRGDFPGEALALFLCMHRSGVRANEITFASVLGSCAAALELHLSGQIHGLVTKFGFCGNVILGSSLVDVYAKCRVMSDACKMFDEIRYPNAITWNVIVRRYLDIGDGKKALFMFSRMFSSAIKPLNFTFSNALVACSSISALKEGLQIHGVVTKLGFLEDNIISTSLINMLVKCGKLDDAYRVFDQLGSKDLFSWTSIVSGYAVSGKTREARKLFDEMPERNVISWNAMLAGYTRYFEWLEAFDFVHQMLDATEDVDHVSLSLILNVSAGLSDHEMGKQVHGYVYRHGYHSNLMVGNALLDMYGKCGNLNSARVWFNQMSNWRDMVSWNALLSSYSHHHLSEQTMTTFSEMQWETIPTKYTFGTLLAACANAFALDHGKQIHGFMIANGHEIDTVIRTALIYMYSRCRCLDYAFEVLKGAAFRDVILWNTMIMGCCHNRRGKEALELFGIMKEEAIKPDHVTLQGVLLACVEEGLIEVGARYFESMSAEYSVLPRLEHYECMIELYSRHGCMDELENFIKTMPIEPTIPMLTRALEACKKHKYTRLGEWIMQQINDFKH 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02902 695 Gene3D Tetratricopeptide repeat domain 3 176 IPR011990 GO:0005515
Bva06g02902 695 Gene3D Tetratricopeptide repeat domain 511 612 IPR011990 GO:0005515
Bva06g02902 695 Gene3D Tetratricopeptide repeat domain 412 510 IPR011990 GO:0005515
Bva06g02902 695 Gene3D Tetratricopeptide repeat domain 613 693 IPR011990 GO:0005515
Bva06g02902 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Bva06g02902 695 TIGRFAM PPR: pentatricopeptide repeat domain 329 359 IPR002885 -
Bva06g02902 695 TIGRFAM PPR: pentatricopeptide repeat domain 563 595 IPR002885 -
Bva06g02902 695 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 478 566 - -
Bva06g02902 695 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 558 693 - -
Bva06g02902 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Bva06g02902 695 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5 477 - -
Bva06g02902 695 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 478 566 - -
Bva06g02902 695 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 558 693 - -
Bva06g02902 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Bva06g02902 695 Gene3D Tetratricopeptide repeat domain 177 254 IPR011990 GO:0005515
Bva06g02902 695 Gene3D Tetratricopeptide repeat domain 255 411 IPR011990 GO:0005515
Bva06g02902 695 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 477 - -
Bva06g02902 695 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Bva06g02902 695 Pfam PPR repeat 200 223 IPR002885 -
Bva06g02902 695 Pfam PPR repeat 301 326 IPR002885 -
Bva06g02902 695 Pfam PPR repeat 360 387 IPR002885 -
Bva06g02902 695 Pfam PPR repeat 228 255 IPR002885 -
Bva06g02902 695 Pfam PPR repeat 635 658 IPR002885 -
Bva06g02902 695 Pfam PPR repeat 128 157 IPR002885 -
Bva06g02902 695 Pfam PPR repeat 433 456 IPR002885 -
Bva06g02902 695 Pfam PPR repeat 102 124 IPR002885 -
Bva06g02902 695 Pfam PPR repeat 329 359 IPR002885 -
Bva06g02902 695 Pfam PPR repeat family 560 606 IPR002885 -
Bva06g02902 695 Pfam PPR repeat family 460 507 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02902 Bva-Chr6 18129956 18132587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02902 21 690 Glycoside Hydrolase AT3G49170 28.571 6.60e-87 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02902 - - gmx:100775626 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02902 06 18129956 18132587 Bva06g02902 06 18129956 18132587 ECH