Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02869 ATGACCACTGAGCATGCGCTTTCAAATTCATGTTTCTTCGCTATAAAACCTCTTCGAAAAACCACTTTCGGCAATAGCAATGTCATCTTTATCGGACCATCTTCTGTTTCTTACGGGCTTCGGCTCCAACGACGTTATCGTAGACGCACACCTGTTATCGCGTCAGTGAAGGAAAATTTTGGCCATATTAAAAAGACTTTGGATGATTTCACCAGCTTGAACGACTTGGTTGTTCGTGACTACAACCGTCTGGTGGACTCCGTTAATGCCCTGGAGCCACAGATTGAGAGACTCTCTGATGAGCAGCTGACTGATAAAACGGAGGAGTTTCGCCTCAGGCTGAGGAGAGGGGAGACGCTAGCTGATATACAAGCTGAGGCATTTTCTGTTGTTCGTGAAgctgcaaaaagaaaacttggaATGCGACATTTCGATGTCCAGATTATTGGTGGAGCAGTGCTTCATGACGGGTCCATTGCAGAGATGAAAACCGGGGAGGGAAAAACTTTAGTTTCCACATTAGCGGCGTATCTTAATGCCCTGACTGGTGAAGGCGTCCATGTGGTAACAGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGCCGTGTTCATAGTTTCTTAGGTCTTTCTGTTGGTCTTATTCAGAGAGGGATGCAAGCTGAAGAGCGGAGATTCAACTATAAATGTGACATAACGTATACCAATAATTCGGAGCTTGGCTTTGACTACTTACGAGATAATCTAGCTGGAAATAGCGGGCAGCTTGTGATGAGATGGCCGAAGCCATTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCCTCATAGATGAAGGAAGAAATCCTTTGCTAATAAGTGGCGAGGCTAGTAAAGATGCTGCACGATACCCTGTTGCTGCGAAAGTTGCTGACTTGCTTATTCAGGGCATTCATTACAATGTAGTGCTTAAAGATAATTCGGTGGAGTTGACTGAGGAAGGAATTGCTCTCGCTGAGATGGCTCTTGAAACAGATGACCTTTGGGATGAAAATGATCCCTGGGCGAGATTTGTGATGAATGctttaaaagcaaaagaattcTACCGCCGAGATGTGCAGTACATAGTTAGGGATGGGAAGGCTCAAATTATTAACGAgCTGACAGGAAGAGCggaagagaaaaggagatgGTCTGATGGGATTCACCAAGCCGTAGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCAGTTGTTGTTGCACAAATCACATACCAGTCATTGTTCAAGCTTTATCCTAAGTTGTCAGGAATGACTGGGACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAGATGTTTAAGATGCCAGTCATTGAAGTGCCAACAAATCTTCCAAATATTCGGAAAGATTTACCTATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGTCGACCTGTTTTAGTTGGGACAACTAGTGTAGAAAATTCTGAACATTTGTCTGGTCTGCTGAAGGAATGGAATATCCCCCACAATGTTCTGAATGCTCGACCCAAGTATGCTGCAAGAGAAGCTGAAATAGTGGCACAGGCAGGGCGGAAACATGCCATTACCATCTCTACAAATATGGCGGGCAGAGGCACAGATATAATCCTCGGTGGAAATCCAAAAATGCTAGCCAGAGAAATTATAGAGGACAGcatactttcatttttgacACAAGAGGCTCCTAACTATGAACTTGCTGGTGAGACAACTTCACAAAAGGTGCTTCCGAAGATAAAGGTTGGATCATCATCAATGGCCTTACTTGCTAAGACAGCCTTAATGGCTAAATATGTAACCAAAAGTGAGGGTAAAAGCTGGACATATCAAAAGGCTAAGTCTTTTATCTCGAAGGCTCTGGAAATGAGTCAGtcatataatttgattgagCTGGAGAAGCTTGCTAACGAAGAATCTGAGATGTACCCTCTTGGTCCAACAGTAGCACTTTCCTATCAGTCTGTTTTGAAGGATTGTGAAGAACACTGTTTGCGTGAAGGGTCTGAGGTGAAAAGACTCGGGGGCCTTCATGTGATTGGTACATCTTTACATGAGTCTCGGAGAATAGATAACCAGcTTCGTGGCAGAGCTGGAAGGCAGGGGGATCCTGGATCAACACGATTTATGGTCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAACTTTGATACTGAATGGGCAGTGAAGCTTATATCAAAGATTACAAATGATGAGGATTTACCAATTGAGGGTGATGCCATCGTCAAACAGCTCTTGGCATTGCAAACCAATGCGGAAAAGTACTTCTTCAGCATAAGAAAGAGCCTCGTTGAGTTTGATGAAGTATTGGAGGTGCAAAGGAAGCATGTTTATGACCTTAGACAATTAATTCTAACGGGCGATGATGAAAGCTGTTCCCAGCATATATTCCATTACATGCAAGCGGTGGTAGATGAAATTGTCTTAGCAAATGTTAACCCGCTAAAGCATCCAGATAGTTGGGATTTGAGCAAGCTCTTGAAAGAGTTTATGACAATGGGTGGAAAGCTGTTGCATGAATCTTTTGCAGGGATTACCAATGACACTTTGTTGAAATCAGTTGGGAAACTGCAAGATGCAAGTTCAATTGACATTGTCAACCTTTCCCTTCCAAATTTGCCAGCACCTCCTAATGCATTCAGGGGCATTCGTAGGAAGAGCTCTTCATTAAGACGTTGGCTTTCTATATGCTCTGATGAGTTAACCAAGAATGGGAAGTATCAGACAACTATCAATCTTCTACGCAAGTACCTTGGAGATTTTCTTATTGcttcatatttaaatgttGTTGAAGAATCTGGTTATGATGAGAGACATGTAAAGGAAATTGAGAGAGCAGTTCTTGTGAAAACCCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGACTCAGCTCAGCGGTAAACATAAGGAGTTTTGGCCACAGAAATCCTCTTGAAGAGTACAAGATTGATGGTTGTcgattttttatatcaatgcTGAGTGCAACGAGAAGGTTAACAGTAGAATCACTGCTACGATATTTGACATCTCCAATGGAGTCCCAAGATCTATTTGTATCATA 3161 0.4109 MTTEHALSNSCFFAIKPLRKTTFGNSNVIFIGPSSVSYGLRLQRRYRRRTPVIASVKENFGHIKKTLDDFTSLNDLVVRDYNRLVDSVNALEPQIERLSDEQLTDKTEEFRLRLRRGETLADIQAEAFSVVREAAKRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRVHSFLGLSVGLIQRGMQAEERRFNYKCDITYTNNSELGFDYLRDNLAGNSGQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVADLLIQGIHYNVVLKDNSVELTEEGIALAEMALETDDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKAQIINELTGRAEEKRRWSDGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFKMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGTTSVENSEHLSGLLKEWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIEDSILSFLTQEAPNYELAGETTSQKVLPKIKVGSSSMALLAKTALMAKYVTKSEGKSWTYQKAKSFISKALEMSQSYNLIELEKLANEESEMYPLGPTVALSYQSVLKDCEEHCLREGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVKLISKITNDEDLPIEGDAIVKQLLALQTNAEKYFFSIRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFHYMQAVVDEIVLANVNPLKHPDSWDLSKLLKEFMTMGGKLLHESFAGITNDTLLKSVGKLQDASSIDIVNLSLPNLPAPPNAFRGIRRKSSSLRRWLSICSDELTKNGKYQTTINLLRKYLGDFLIASYLNVVEESGYDERHVKEIERAVLVKTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVESLLRYLTSPMESQDLFVS 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02869 1053 SUPERFAMILY Pre-protein crosslinking domain of SecA 290 411 IPR036670 GO:0016020|GO:0017038
Bva06g02869 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 749 IPR027417 -
Bva06g02869 1053 Gene3D - 81 459 IPR027417 -
Bva06g02869 1053 PRINTS SecA protein signature 230 250 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bva06g02869 1053 PRINTS SecA protein signature 383 405 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bva06g02869 1053 PRINTS SecA protein signature 123 147 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bva06g02869 1053 PRINTS SecA protein signature 161 175 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bva06g02869 1053 PRINTS SecA protein signature 177 187 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bva06g02869 1053 PRINTS SecA protein signature 457 470 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bva06g02869 1053 PRINTS SecA protein signature 420 437 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bva06g02869 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 459 IPR027417 -
Bva06g02869 1053 ProSiteProfiles SecA family profile. 63 767 IPR014018 -
Bva06g02869 1053 CDD SF2_C_secA 464 735 IPR044722 -
Bva06g02869 1053 TIGRFAM secA: preprotein translocase, SecA subunit 88 861 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bva06g02869 1053 Pfam SecA preprotein cross-linking domain 298 402 IPR011130 GO:0016020|GO:0017038
Bva06g02869 1053 Gene3D - 461 767 IPR027417 -
Bva06g02869 1053 Hamap Protein translocase subunit SecA [secA]. 63 1043 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bva06g02869 1053 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 58 1051 - -
Bva06g02869 1053 CDD DEXDc_SecA 102 458 - -
Bva06g02869 1053 Gene3D Helical scaffold and wing domains of SecA 770 890 - -
Bva06g02869 1053 SMART SecA_PP_bind_2 291 402 IPR011130 GO:0016020|GO:0017038
Bva06g02869 1053 Gene3D Helical scaffold and wing domains of SecA 908 1040 - -
Bva06g02869 1053 SMART SecA_DEAD_2 70 446 IPR011115 GO:0005524|GO:0016020|GO:0017038
Bva06g02869 1053 Pfam SecA DEAD-like domain 72 445 IPR011115 GO:0005524|GO:0016020|GO:0017038
Bva06g02869 1053 Pfam SecA Wing and Scaffold domain 765 1039 IPR011116 GO:0016020|GO:0017038
Bva06g02869 1053 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 58 1051 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bva06g02869 1053 Gene3D - 292 412 - -
Bva06g02869 1053 SUPERFAMILY Helical scaffold and wing domains of SecA 771 872 IPR036266 -
Bva06g02869 1053 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 310 IPR014001 -
Bva06g02869 1053 SUPERFAMILY Helical scaffold and wing domains of SecA 939 1049 IPR036266 -
Bva06g02869 1053 ProSitePatterns SecA family signature. 546 561 IPR020937 GO:0006605|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02869 Bva-Chr6 17933281 17943726 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02869 K03070 - gmx:100793437 1744.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02869 06 17933281 17943726 Bva06g02869 06 17933281 17943726 ECH