Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02868 ATGGAGTTGCCGGAGTGCCCCGTTTGCCTTCAGAATTACAACGAAGAGAGTACAGTTCCTCGGGTACTCTCCTGCGGCCACTCGGTTTGCGAGGCTTGCCTTGTTGAGCTGCCACAACGATACTCCGACACTATTCGCTGCCCCGCTTGTACCCAACTCGTGAAGTACCCAGCCCAACAAGGTCCCTCTGGTCTTCCCAAGAACATTGATCTCCTCAGACTCTGTGTAGAACAATCTTCTTCTAAATCTCAGAATTCCAGCGAACAATCCACAAATAATGGGTATGATCACTCTCAATTTTGTCCTCGGTTCTGGTCGGACGAGTTCTACACCACCTGGAAGGATTGGATCATTCCGCACGATCTCGTTTCGATTAATTCAAAATCCAGTGGTCACGAAAGGCCTGGTCTTGGATTTGTGCTACGAGGACGATTTGGTTCAACTTCTTCATTGAAAGGTCGGGTTTGCTTCAAAGATGGCCACGATTTGAGTCTTGCTCCCATCGTTTCTCTACCACCTACGAGTAATTCTAAATTCAGGTTTTGTTACGTTGCCCGAATAATGAAGTGTTTGCAGGGAATGAAAGAAGCTGAGAGGGAAGAATTGGCTTTGATACTCAAAGTTTCCTCGAAACAGAATCGGATATGTAAAGTTTATGGCTTGTGGAGTGACTTGGTCGATGGGTATCTATATCTAGTGTGTGAGAGGCACGATGATAGTCTTCCCAACAAGTTTGGTGAATTGAGAAATGGGTTTCTCGGCGCGGGTGGGGATGGTTTGAGCAGAGATGGAGTTTTGAGTTTTGCTATGATAGGTATGAGTATTTGTGACGCTTTGATTGCTTTTCATTCGGGAGGTTTGGCTGCAGGctattttggactttcttccttttgttttgatgAGCTTGGTAGTATTTGTATTGATCTGAATGAGGTATTATTGACTGGAAGACAGATTCCTGCTACTGTCATGAATACCATTTCTAGGTGCAGTAGTAATGAAGATAAAGAAGGAGTAATTCGAGATGATTTTTTGAAGAATGAGGTTTTCATAAGCCCCGAGCTTTTGTTTGAGTTATTGCCGAAAGAGTCTATTAGTCTAGAGAATGGGTATACTGGGCATCTCATTGGATATAGTTCGGATGTGTGGTCATTGGCTTGTGTGTTGCTGCAGCTTCTTTTTGGAAATTCATTTCCTCGGTATACCTTGCTAATGAATGAAGAGGAAGGCTTTAACTTCTCAGCTAGTTATATTGATTGGGTGGGGCAAGTTAGTTCTTtgatggaagaaaaattgGGTTCAGAATATCTAACATTCAGGAAGACTCTTTACGATTGTTTGGCCTTAAATCCAGGAAGTCGCTTGCATGTGCCTGATGTTAGGAAATGCATTCAAGGTATGTTAGTAAAATCTCAGTTTGATGTTTTGGGGCGCTTGGAGGTTGCAACAAATATGAACAGCACACATTGCTGTTTAATTCTGGGGGAATTGTGTCAGTTTCACAAGGAAACATCAAAAGCACAGAGAAAATGTGACTTGCAGGAGAAGCAAGAAGGTGGTGAACCGGATTTTTCTCAAGATGGAGAGGACCAAGCTGATGAGGGCTTATCTAAGGGAATGGTTGAACTAACAGATCTGCGAGGCCATCTCAATTGTATAACAGGATTGGCTGTTGGAGGAGGATATCTGTTTAGCTCCTCGTTTGACAAAACCATCCGTGTATGGTCTTTGCAGGACTTTTCTCATCTTCACACATTTAGAGGTCATGAGCATAGAGTCATGGCTCTGGCTTATGTAGATGAAGAAGACCCATTGTGCATAAGTGGTGACATTGGCGGGGGCATATTTATCTGGGGAATAACTTCTCCTCTTGGGGAAGATCCATTGAAGAAATGGTATGAGCAAAGGGATTGGCGCTTTAGTGGTATCCATTCCTTGACTGTTTCCAGAAAACATGGTATTTACACTGGAAGTGGAGATAGAACAATAAAAGCTTGGTCATTGAAGGATGGCAATTTGATATGCACAATGACTGGTCATAAATCTGTAGTTTCAACACTCACAATATGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGAACCATTCGGTTGTGGAGTCTTAACGATCACAGTCCATTGACAGTACTGGGGGAAGATATGCCGGGTGAAGTTAAGCCTGTCCTCTCTATTATTGCTGATAGACATTTGCTTGTTGCAGCTCATGAAAATGGATATATAAAGGTCTGGAAGAATGATGTATtcatgaatgaaaagaaattgcacAGTGGCGCCATTTTTGCTGTTAGCATGCAGGGAAAATTCCTTTATACAGGAGGCTGGGACAAAAATGTTAATACACAGGAATTATCAGGAGATGAGTTTCAACTGGATGTCAGATCAATTGGCTCTATATCTTACCGTTCTGTTGTAACAGCTTTATTATGCTGGGAGGGAAAACTTTATGTTGGATATGCTGACAACTCAATTAAGGTTTATAATCACGAGTA 2510 0.4151 MELPECPVCLQNYNEESTVPRVLSCGHSVCEACLVELPQRYSDTIRCPACTQLVKYPAQQGPSGLPKNIDLLRLCVEQSSSKSQNSSEQSTNNGYDHSQFCPRFWSDEFYTTWKDWIIPHDLVSINSKSSGHERPGLGFVLRGRFGSTSSLKGRVCFKDGHDLSLAPIVSLPPTSNSKFRFCYVARIMKCLQGMKEAEREELALILKVSSKQNRICKVYGLWSDLVDGYLYLVCERHDDSLPNKFGELRNGFLGAGGDGLSRDGVLSFAMIGMSICDALIAFHSGGLAAGYFGLSSFCFDELGSICIDLNEVLLTGRQIPATVMNTISRCSSNEDKEGVIRDDFLKNEVFISPELLFELLPKESISLENGYTGHLIGYSSDVWSLACVLLQLLFGNSFPRYTLLMNEEEGFNFSASYIDWVGQVSSLMEEKLGSEYLTFRKTLYDCLALNPGSRLHVPDVRKCIQGMLVKSQFDVLGRLEVATNMNSTHCCLILGELCQFHKETSKAQRKCDLQEKQEGGEPDFSQDGEDQADEGLSKGMVELTDLRGHLNCITGLAVGGGYLFSSSFDKTIRVWSLQDFSHLHTFRGHEHRVMALAYVDEEDPLCISGDIGGGIFIWGITSPLGEDPLKKWYEQRDWRFSGIHSLTVSRKHGIYTGSGDRTIKAWSLKDGNLICTMTGHKSVVSTLTICDEVLYSGSWDGTIRLWSLNDHSPLTVLGEDMPGEVKPVLSIIADRHLLVAAHENGYIKVWKNDVFMNEKKLHSGAIFAVSMQGKFLYTGGWDKNVNTQELSGDEFQLDVRSIGSISYRSVVTALLCWEGKLYVGYADNSIKVYNHE 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02868 836 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Bva06g02868 836 SUPERFAMILY WD40 repeat-like 542 834 IPR036322 GO:0005515
Bva06g02868 836 Pfam WD domain, G-beta repeat 543 576 IPR001680 GO:0005515
Bva06g02868 836 Pfam WD domain, G-beta repeat 672 707 IPR001680 GO:0005515
Bva06g02868 836 Gene3D - 505 623 IPR015943 GO:0005515
Bva06g02868 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 585 IPR001680 GO:0005515
Bva06g02868 836 ProSiteProfiles Protein kinase domain profile. 134 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva06g02868 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Bva06g02868 836 SMART WD40_4 798 834 IPR001680 GO:0005515
Bva06g02868 836 SMART WD40_4 539 576 IPR001680 GO:0005515
Bva06g02868 836 SMART WD40_4 625 667 IPR001680 GO:0005515
Bva06g02868 836 SMART WD40_4 579 619 IPR001680 GO:0005515
Bva06g02868 836 SMART WD40_4 710 751 IPR001680 GO:0005515
Bva06g02868 836 SMART WD40_4 670 707 IPR001680 GO:0005515
Bva06g02868 836 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 2 836 - -
Bva06g02868 836 Gene3D - 627 836 IPR015943 GO:0005515
Bva06g02868 836 Gene3D Transferase(Phosphotransferase) domain 1 287 480 - -
Bva06g02868 836 SMART serkin_6 139 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva06g02868 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 677 716 IPR001680 GO:0005515
Bva06g02868 836 PRINTS G protein beta WD-40 repeat signature 654 668 IPR020472 -
Bva06g02868 836 PRINTS G protein beta WD-40 repeat signature 694 708 IPR020472 -
Bva06g02868 836 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Bva06g02868 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 677 709 - -
Bva06g02868 836 SUPERFAMILY Protein kinase-like (PK-like) 187 471 IPR011009 -
Bva06g02868 836 SUPERFAMILY RING/U-box 5 57 - -
Bva06g02868 836 Pfam RING-type zinc-finger 6 48 IPR027370 -
Bva06g02868 836 MobiDBLite consensus disorder prediction 512 531 - -
Bva06g02868 836 SMART ring_2 6 50 IPR001841 -
Bva06g02868 836 CDD RING-HC_TRIM32_C-VII 5 51 - -
Bva06g02868 836 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Bva06g02868 836 PANTHER - 2 836 IPR044715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02868 Bva-Chr6 17928257 17932649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02868 561 779 Acyl Lipid Metabolism Gene Families AT3G18860 29.825 2.45e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02868 - K03070 lja:Lj1g3v0874380.1 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02868 06 17928257 17932649 Bva06g02868 06 17928257 17932649 ECH