Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02867 ATGATTAAACTTTTTGAcccaagaagaaaattgaactTCAAATGGATGATGTATCTTAAAATGTATAGCACAAGTGAACCTATGCAGGATATTTCTGATTTAACAAAACAAGCGTGTAAGGTTATGATGTATTGTCCTAAATTAGCACTTGATACTGCTCTTGATCAAACTGGGATTAGAGTTTCATCAGATTTAGTTGAAAATGTCCTTGAAAGATTTGAGAATGCTGGTATGTTGGCATATCGGTTCTTTGAATGGGCTGGGAAGCAAAGAAACTACTCACACAGCATTAGAGCATACCATGCAATGATTGGATCCTTGGCAAAGATAAGGCAGTATCAGATCATGTGGGACCTTGTGAATGACATGAGGAAAAAGGGGATGCTAAATGTTGAGACCTTCTGTATTATAATGAGAAAGTACACTAGGGCTAAGAAGATAGACGAGGCACTATACACATTTAATGTCATGGAAAAATATGACATACCTCCTAATCTTGCATCATTCAATGGTTTGCTGAGTGCTTTATGCAAATCCAAGAATGTAAGGAAGGCACAAGAGATCTTTGATAGTATGAAGGGTCGATTTGTTCCAGACTCGAAAACTTATAGCATATTAATTGAAGGATGGGGAAAGGCTCCAAATCTGCCCAAAGCTAGACAGGTTTTCAGAGAAATGGTTGATGTGGGGTGCAACCCTGATGTAGTTACATATGGCATAATGGTCGATGTTCTCTGCAAAGCTGGAAGAGTTGATGAAGCGGTTGAGGTTGTTAAGGATATGGATGCTAACGGTTGCAGGCCAACATCTTTTGTTTACAGTGTTCTGGTCCATACATATGGAGTAGAAAATCGGATTGAAGATGCTATCGATACCTTCCTGGAGATGGAAAGGAAGGGAATCAAGGCAGATGTAGTAGTCTATAATGCCTTGATTGGTGCTTTTTGTAAAGTAAATAGATTCAAGAATGTTGATAGGGTTTTAAATGACATGGAATGCCGTGGTGTTGCTCCTAATTCAAGGACATATAATGTTATCATAAGCAGTTTAATTGGCCGAGGACAAACTGATGAGGCTTTTCGTGCCTTCCGCAGGATGATTGAGTCATGTGAGCCAGATTCTGACACTTACACaatgatgataaaaatgttttgtcAAAGAGATGAATTAGATATGGCTCTGAAAATATGGAGTTATATGAGGAAAAAACGGTTTGTCCCAAGCATGCACACCTTTTCAGTCCTTATAAATGGGTGCTGTGAGAAGGCAAATGTTACAAAAGCTTGTGTTTTGTTGGAAGAAATGATAGAGAAGGGAATTCGGCCATCTGGTGTTACATTTGGGAGGTTAAGACAGTTGCTTATAAAGGAAGGGAGAGAGGATGTACTCAAATTTCTTCAGGAGAAAACAAATCTTCTTGTCAAGGAGcctttatttgattg 1442 0.3752 MIKLFDPRRKLNFKWMMYLKMYSTSEPMQDISDLTKQACKVMMYCPKLALDTALDQTGIRVSSDLVENVLERFENAGMLAYRFFEWAGKQRNYSHSIRAYHAMIGSLAKIRQYQIMWDLVNDMRKKGMLNVETFCIIMRKYTRAKKIDEALYTFNVMEKYDIPPNLASFNGLLSALCKSKNVRKAQEIFDSMKGRFVPDSKTYSILIEGWGKAPNLPKARQVFREMVDVGCNPDVVTYGIMVDVLCKAGRVDEAVEVVKDMDANGCRPTSFVYSVLVHTYGVENRIEDAIDTFLEMERKGIKADVVVYNALIGAFCKVNRFKNVDRVLNDMECRGVAPNSRTYNVIISSLIGRGQTDEAFRAFRRMIESCEPDSDTYTMMIKMFCQRDELDMALKIWSYMRKKRFVPSMHTFSVLINGCCEKANVTKACVLLEEMIEKGIRPSGVTFGRLRQLLIKEGREDVLKFLQEKTNLLVKEPLFD 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02867 480 Pfam PPR repeat 230 261 IPR002885 -
Bva06g02867 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Bva06g02867 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Bva06g02867 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Bva06g02867 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Bva06g02867 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 12 477 - -
Bva06g02867 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Bva06g02867 480 Gene3D Tetratricopeptide repeat domain 264 353 IPR011990 GO:0005515
Bva06g02867 480 Gene3D Tetratricopeptide repeat domain 354 476 IPR011990 GO:0005515
Bva06g02867 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Bva06g02867 480 PANTHER OS03G0761300 PROTEIN 12 477 - -
Bva06g02867 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Bva06g02867 480 Pfam PPR repeat family 164 209 IPR002885 -
Bva06g02867 480 Pfam PPR repeat family 304 350 IPR002885 -
Bva06g02867 480 Pfam PPR repeat family 372 420 IPR002885 -
Bva06g02867 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Bva06g02867 480 Pfam PPR repeat 272 301 IPR002885 -
Bva06g02867 480 Pfam PPR repeat 99 127 IPR002885 -
Bva06g02867 480 Pfam PPR repeat 133 161 IPR002885 -
Bva06g02867 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Bva06g02867 480 TIGRFAM PPR: pentatricopeptide repeat domain 133 165 IPR002885 -
Bva06g02867 480 TIGRFAM PPR: pentatricopeptide repeat domain 376 408 IPR002885 -
Bva06g02867 480 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Bva06g02867 480 TIGRFAM PPR: pentatricopeptide repeat domain 99 128 IPR002885 -
Bva06g02867 480 TIGRFAM PPR: pentatricopeptide repeat domain 236 269 IPR002885 -
Bva06g02867 480 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Bva06g02867 480 TIGRFAM PPR: pentatricopeptide repeat domain 168 195 IPR002885 -
Bva06g02867 480 TIGRFAM PPR: pentatricopeptide repeat domain 306 339 IPR002885 -
Bva06g02867 480 TIGRFAM PPR: pentatricopeptide repeat domain 342 370 IPR002885 -
Bva06g02867 480 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Bva06g02867 480 Gene3D Tetratricopeptide repeat domain 193 263 IPR011990 GO:0005515
Bva06g02867 480 Gene3D Tetratricopeptide repeat domain 25 192 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02867 Bva-Chr6 17924875 17927455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02867 103 468 Glycosyltransferase AT1G05670 24.122 8.60e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02867 - - qsu:112022190 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02867 06 17924875 17927455 Bva06g02867 06 17924875 17927455 ECH