Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02807 ATGAAAGCTACTGTTGAACCATCTTTGGTTGAGAGGTTTGATGAGGgggaaaaggagaagaagaagaaacggCGATCCAATCGTCGATCCAAGCAAAATTCTGCATCCTCAGTAAACGAGATTCCCATGGTGTCATCAGAGTGTTCTGGAAACAGCAAAACAACTAGACCTACACACGTGACTGCATCTTCAAGTAATTCCTTATCGAAGCAGCAAGGGGTCAATGTTTCTGCCCCCAACGAAGAAGGATTGTCCAGAGCATCGaatgtttctttcatttcaatgCCACCAATGCATATTAATGAACAAGTGGATCCTGCTGATTTGCAAAATATACAAACGAACGATGGAGGAACGTTTTCAAAATCATCTTCTGAGCCAACTGATTGTAGAGTTCCCTCAGGAATTTATACAAACAaggatttgttttcttctagTCAGACTGGGGTTTGTGTGCAGAGAAGCTTTTATAGCTCACACTGGTCTCTGGATGCCATTGAGAAGGCATTAGAGaaGGGTGATGTTTTTAAAGCCCTCTTTCGTGTCAATGCTTACAATAGACTTGAGGCTTACTGCAAAATTGATGGAGTGCCAATAGATGTCCTCATCAATGGAATTCCTGCCCAGAATAGAGCGGTGGAAGGTGACACCGTTGCAATTAAGATTGATCCTTTGCCATTGTGGACAAAAATGAAAGGATCAAACGGGACTTGTAACATTAATGCATCAGTTGTAGAAGGTGGTAACCTACTCACTGCAGGTGATGAAGTATTTTGTAATATGTCTAAAGGAAAAGGTAAGGTAGAATGGGATAATGAATCTGGCCAGTACAGAAGTTGCCCTGGTCAAAACAAGGGGGAAGCTGATAATTACGGCACTCCTTATAGAAGTTGTGCTTTCCCTGAAGACAGATACTGCTGCGAGGATAATGCTTCCCACAATTCAACTCCCCACATAGATTCATTTGGACTGGTGAATCATGATGGTCTTGATGGATGGCATGATTTCTTAAATACCAGTTTTTCTAATGGACAGAATGAAGTCATTAATGCAGTTGAAAGGATGTGTTCTATGGTTAATTCTTACCCTTCCAAAAGACCAACTGGCAGGGTAGTTGCCATTCTTGAGAGGTCTCTTCGTCGAGAGACTGTTGTTGGTCATCTTAATGTTAGGCAGTGGATTTCTTACAGGGACATGAATAGAAAAGATGccaagaagaacaaaaatttgGTTTCTGAGGATGAGTATGTCCAGCTTACACCAACTGATGCAAAGTTTCCAAAACTGATACTTCTTGTTAGAGATTTGCCGGACTTCCTAAAGAAAAGGCTACAAAGTGGGGATTTGACAGTTGAAATGGATCTGGTAGCTGCACAAATTGATGATTGGGTTGAAGAAAGTCCTTTTCCTCAAGCTCACATCTTGCATGTGTTTGGACGAGGTGGTGAAATTCAACCACAATTAGATGCAATCTTGTTTCAGAATGCAATCTGTTTGTCTGAATTTTCTCCTGAAGCTCTGTCCTGCCTTCCACCTGTTCCTTGGGAGGTTCCAGTGAAGGAATTTAACACTAGAATGGATCTTCGAAATATGTGCATATTTACTATTGATCCTTCTACTGCTATTGATCTGGATGACGCACTGTCAGTTGAGAAATTACCTAATGGAAACTATAGAGTCGGTGTCCACATTGCTGATGTATCATACTTTGTTTTACCAGACACGGCCTTAGATCAAGAGGCTAAGTCTAGGTCAACAAGTGTCTATATGTTACAAAGAAAGTTACCAATGCTGCCACCATTATTTACAGAGGATATAGGTTCACTCAATCCTGGGGTAGATCGACTGGCCATTTCCATGTTCCTGGACATAAACCATGCTGGTGATGTTGTAGATCGTTGGATTGGTCGTACTGTGATACACTCTTGTTGTAAGCTGTCATATGAGCATGCTCAGGATATcattgatgatgttattgaTATTGAGAATTCCAATGTCATGGGACCTTACTATCCTAAGGTGCACGGCCGCTTTGAATGGCCTGATATTATTACATCTGTGAGGAGtcttcataaaatttcaaaagttctAAAAGATAAAAGGTTTAATGCTGGAGCTCTACGGCTTGAAAGTTCAAAAGTTGTTCTTCTCTTTGATGAACATGGAATTCCATATGATAGTATGCTCTCTGAGCGGAAAGAGtcaaattttcttgttgagGAATTCATGCTTTTGGCTAATAGAACTGCTGCTGAAGTTATCTGTAGAGCTTATCCTGATGGTGCATTACTGCGAAGGCATCCTGAACCTAATATGAGGAAACTGAGAGAGTTTGAGGCATTTTGTCTGAAACATGGTTTAGAGTTAGACACATCTTCATCTGGCCTTATCCATCAGTCGTTAGAGCAGATCAGGGAAAAGCTTAAGGGTGACTCAACACTTTATGATATTCTTATTAACTATGCTACGAAGCCAATGCAGTTGGCATCTTACTTTTGTAGTGGAGATTTAAAGGACAATGAAAATGATTGGGGTCATTATGCATTGGCTGTCCCCTATTACACTCATTTTACATCACCCCTGCGTCGATATCCAGATATTGTTGTTCATCGAACATTACTTGCTACCATAGAAGCTGAGGAATTGTATCTGAagcatcaaaagaaatttctggTCAACAAAAAAGAGGATGTGCAAAAAAGGTGTTTCACAGGTATAAACGTTGATAAAAATGCTGCAGAATCCTCGGAAGGCAGGGAAGCCTTTTCGGCTGCAGCTTTGAAGCATAAAGTTCCGTGCAGTGAGTTACTCGTAGATATTGCTGCTTATTGCAATGAGAGAAAGATAGCAAGTAGAAACGTTAAGGATTCATGTGATAAGCTTTACATGTGGGTTCTCCTGAAGAAAAAGGAGTTGTTACTGTCAGAAGCAAGAATATTGGGACTGGGCCCCAGATTCATGTCTATTTATATTCAGAAGCTAGCTATTGAGCGACGGATATATTATGATGAAGTTGAAGGCTTGACTGTGGAGTGGCTTGATGTGACGTCCACTTTGGTGCTTAGCATGTGTCCTAATAAACGTGGATTTAGGAGAGGTAGCCCTGGAAAATGGAGGGCATTTGATGAAGTTGCATGTCTCTCTTGTCCGTATGATCTGAAAAAATCAATGGATGATTCTAAGGAGTGCGATGCAGCAAAGGTGGGAGATGGCATAGCTGCCATGAACAGGGAGAATGGTTCCAAATCTGACAATTCAGAGACTGATACTGAACCTGCAGTTTTCCCTCTCACAGTGCGTCTTCTTTCAACAATTCCAGTAGTACTGCACGCTGTTGGCGGTGATGATGGACCCCTTGATATTGGGGTGAGGCTGTACATGAGCTCATATTTCAAGTG 3398 0.397 MKATVEPSLVERFDEGEKEKKKKRRSNRRSKQNSASSVNEIPMVSSECSGNSKTTRPTHVTASSSNSLSKQQGVNVSAPNEEGLSRASNVSFISMPPMHINEQVDPADLQNIQTNDGGTFSKSSSEPTDCRVPSGIYTNKDLFSSSQTGVCVQRSFYSSHWSLDAIEKALEKGDVFKALFRVNAYNRLEAYCKIDGVPIDVLINGIPAQNRAVEGDTVAIKIDPLPLWTKMKGSNGTCNINASVVEGGNLLTAGDEVFCNMSKGKGKVEWDNESGQYRSCPGQNKGEADNYGTPYRSCAFPEDRYCCEDNASHNSTPHIDSFGLVNHDGLDGWHDFLNTSFSNGQNEVINAVERMCSMVNSYPSKRPTGRVVAILERSLRRETVVGHLNVRQWISYRDMNRKDAKKNKNLVSEDEYVQLTPTDAKFPKLILLVRDLPDFLKKRLQSGDLTVEMDLVAAQIDDWVEESPFPQAHILHVFGRGGEIQPQLDAILFQNAICLSEFSPEALSCLPPVPWEVPVKEFNTRMDLRNMCIFTIDPSTAIDLDDALSVEKLPNGNYRVGVHIADVSYFVLPDTALDQEAKSRSTSVYMLQRKLPMLPPLFTEDIGSLNPGVDRLAISMFLDINHAGDVVDRWIGRTVIHSCCKLSYEHAQDIIDDVIDIENSNVMGPYYPKVHGRFEWPDIITSVRSLHKISKVLKDKRFNAGALRLESSKVVLLFDEHGIPYDSMLSERKESNFLVEEFMLLANRTAAEVICRAYPDGALLRRHPEPNMRKLREFEAFCLKHGLELDTSSSGLIHQSLEQIREKLKGDSTLYDILINYATKPMQLASYFCSGDLKDNENDWGHYALAVPYYTHFTSPLRRYPDIVVHRTLLATIEAEELYLKHQKKFLVNKKEDVQKRCFTGINVDKNAAESSEGREAFSAAALKHKVPCSELLVDIAAYCNERKIASRNVKDSCDKLYMWVLLKKKELLLSEARILGLGPRFMSIYIQKLAIERRIYYDEVEGLTVEWLDVTSTLVLSMCPNKRGFRRGSPGKWRAFDEVACLSCPYDLKKSMDDSKECDAAKVGDGIAAMNRENGSKSDNSETDTEPAVFPLTVRLLSTIPVVLHAVGGDDGPLDIGVRLYMSSYFK 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02807 1132 Gene3D - 151 245 - -
Bva06g02807 1132 PANTHER DIS3-LIKE EXONUCLEASE 2 22 1130 - -
Bva06g02807 1132 SMART RNB_2 525 879 IPR001900 GO:0003723|GO:0004540
Bva06g02807 1132 SUPERFAMILY Nucleic acid-binding proteins 487 969 IPR012340 -
Bva06g02807 1132 Pfam RNB domain 525 877 IPR001900 GO:0003723|GO:0004540
Bva06g02807 1132 SUPERFAMILY Nucleic acid-binding proteins 155 377 IPR012340 -
Bva06g02807 1132 Gene3D - 399 483 - -
Bva06g02807 1132 MobiDBLite consensus disorder prediction 1 82 - -
Bva06g02807 1132 Hamap DIS3-like exonuclease 2 [DIS3L2]. 34 1107 IPR028591 GO:0000175|GO:0034427
Bva06g02807 1132 ProSitePatterns Ribonuclease II family signature. 846 870 IPR022966 -
Bva06g02807 1132 Pfam Dis3-like cold-shock domain 2 (CSD2) 416 495 IPR041505 -
Bva06g02807 1132 PANTHER RIBONUCLEASE 22 1130 - -
Bva06g02807 1132 MobiDBLite consensus disorder prediction 31 82 - -
Bva06g02807 1132 MobiDBLite consensus disorder prediction 7 21 - -
Bva06g02807 1132 SUPERFAMILY Nucleic acid-binding proteins 368 497 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02807 Bva-Chr6 17609022 17614889 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02807 K18758 - gmx:100817387 1582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02807 06 17609022 17614889 Bva06g02807 06 17609022 17614889 ECH