Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02796 ATGGATATtaataaaatccaaattttttttcgcTATTGTGGGCGACTCCGCGCTATCAGACCTGGAAAATCACttcattcttatttaatcaaaCTTGGGTTTTTGAATGATGTATTTCTTGTGAATAATATGATGTCCATGTATGTTAGATGCTCTCGTTTGGAAGATGCACAAAAGGTTTTCGATGAAATGACTGATAGAAATATCATTACATGGACAACGATGGTCTCTGCCTATACTAATAGTGGAAGGCCTCATGAAGGTCTTAGACTGTACGATCAGATGATGGAATCTGGAAAAGAGGAACCCAACGAGTTCCTGTACTCTGTGGTTCTGAAGGCGTGTGGTCTTGTGGGAGATGTTGAATTGGGCAAATTGattcatcaatatatatgcGGAGATAAGTTAGAGTTTGATATTGTTTTGATCAATTCACTCCTGGTCATGTATGTCAAATGTGGGAACTTGAAGGATGCACAAGAAGTTTTCGACAAGATCCTCTGTAAAAATTCAACTTCATGGAACACCCTTATTCTGGGTTATACTAAAGAAGGTTTAATGAATGAAGCACTGGATTTGTTCAATCGAATGCCAGAACCAGATCTTGTATCTTGGAACAGTATCATTTCTGGTCTTGCATATAATGTTAGTTCCCATGCTTTGCAATTTGTTTCTACTATGCACATGAAAGGCCTTAGATTTGACGCTTTCACATTCCCATGTGCTCTCAAAATATGTAGTCATCTTGGCGAGTCAACCATGGGGAGACAAATTCACTGCTATATTATCAAGTCAGGGTTTGAGTCTAGCTGTTACAGTATATCAGCATTGATTGATATGTATTCCAATTGCGAGTTACTAAATGAAGCAAACAGGATATTTCATCAATATTTCAAGTGCTCTCCTGTTGCAGATAGCTTGGTACTCTGGAATTCAATGCTTTCTGGGTATGTTGTCAATGAGGATTATTCAAAGGCTCTCAATCTGATTGCACAAATACATTATTCTGGTGCACATTTTGATTCCTTTACCTTTAGTATTGCTTTGAAGGTCTGCATAAACTTCCAGAACTTGAGACTAGCATCTCAAGTGCATGGCTTGGTCATCGCCAGTGGCTATGGATTCGATTTTGTTATTGGAAGCGTTCTTGTTGATATATACTCAAGACAGGGAAATATTAATAATGCGTTAAAAGTGTTTGAAAGGTTATCAGATAATGACGTTGTAGCTTGGTCTAGCTTGATTGCTGGTTGTGCTAGAATGGGTTTAGGCGCCTTAgccttttcactttttattgaTATGGTCAATTTAAACCTTGAGATTGATCAATATGTCATTTCAAGTGTTCTGAAAGTTTCCTCCAGTTTAGCATCTCTTCGAAGTGGCAAACAACTTCATGTTTTTTGTCTCAAGAAAGGATATGAATCAGAGGGAGTTACTATAACATCACTGATTGACATGTATGCAAAATGTGGTGAGATTGAGGATAGTTTAGCTTTGTTTCGTTCTGTTTCAGAAACAGATGTCACGTGTTGGACAGGGATAATTGTGGGGTGTgcacaaaatggaagaacagACGAGGCAATTAGCCTTTTGCACGAGATGATAGAATCAGGGATGAAACCAAATGAAATCACTCTTCTAGGTGTTCTTACTGCCTGTAGGCATGCTGGCCTAGTTGAAGAGGCATGGACCATATTCCACTCTATTAAAACTGAGCATGGTCTGACACCATGTCTAGAGCATTACCATTGTATGGTCGATATACTTGGCCAAGCAGGTTGCTTCAAAGAAGCACTGAAATTGATTAGCGCCATGCCATTTGAGCCCGACAAAACCATATGGTGCTCCTTGCTTGTTGCCTGTGGAACTCACAAAAACAGAGAGCTTGCAAATATTGTTGCTGAGCATCTTCTTGTTAACTCACCAGAAGATGCCTCTCTATATGTAATGCTGTCAAATGTGTATGCAGCCTTGGGAATGTGGGAAAGTTTAAGCAAAGTAAGGGAAGTCGTCAAGCAAGTAGGTACAAAAGAAGCTGGAAAAAGCTGGATTGAGATTTCAGATTG 2069 0.3775 MDINKIQIFFRYCGRLRAIRPGKSLHSYLIKLGFLNDVFLVNNMMSMYVRCSRLEDAQKVFDEMTDRNIITWTTMVSAYTNSGRPHEGLRLYDQMMESGKEEPNEFLYSVVLKACGLVGDVELGKLIHQYICGDKLEFDIVLINSLLVMYVKCGNLKDAQEVFDKILCKNSTSWNTLILGYTKEGLMNEALDLFNRMPEPDLVSWNSIISGLAYNVSSHALQFVSTMHMKGLRFDAFTFPCALKICSHLGESTMGRQIHCYIIKSGFESSCYSISALIDMYSNCELLNEANRIFHQYFKCSPVADSLVLWNSMLSGYVVNEDYSKALNLIAQIHYSGAHFDSFTFSIALKVCINFQNLRLASQVHGLVIASGYGFDFVIGSVLVDIYSRQGNINNALKVFERLSDNDVVAWSSLIAGCARMGLGALAFSLFIDMVNLNLEIDQYVISSVLKVSSSLASLRSGKQLHVFCLKKGYESEGVTITSLIDMYAKCGEIEDSLALFRSVSETDVTCWTGIIVGCAQNGRTDEAISLLHEMIESGMKPNEITLLGVLTACRHAGLVEEAWTIFHSIKTEHGLTPCLEHYHCMVDILGQAGCFKEALKLISAMPFEPDKTIWCSLLVACGTHKNRELANIVAEHLLVNSPEDASLYVMLSNVYAALGMWESLSKVREVVKQVGTKEAGKSWIEISD 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02796 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Bva06g02796 689 PANTHER - 193 435 - -
Bva06g02796 689 PANTHER - 11 198 - -
Bva06g02796 689 PANTHER - 297 687 - -
Bva06g02796 689 Pfam PPR repeat 144 169 IPR002885 -
Bva06g02796 689 Pfam PPR repeat 409 438 IPR002885 -
Bva06g02796 689 Pfam PPR repeat 479 502 IPR002885 -
Bva06g02796 689 Pfam PPR repeat 308 333 IPR002885 -
Bva06g02796 689 Pfam PPR repeat 582 606 IPR002885 -
Bva06g02796 689 Pfam PPR repeat 173 199 IPR002885 -
Bva06g02796 689 Pfam PPR repeat 382 406 IPR002885 -
Bva06g02796 689 SUPERFAMILY TPR-like 39 664 IPR011990 GO:0005515
Bva06g02796 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Bva06g02796 689 Pfam E motif 625 686 IPR046848 -
Bva06g02796 689 TIGRFAM PPR: pentatricopeptide repeat domain 70 104 IPR002885 -
Bva06g02796 689 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Bva06g02796 689 TIGRFAM PPR: pentatricopeptide repeat domain 173 198 IPR002885 -
Bva06g02796 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 37 67 IPR002885 -
Bva06g02796 689 Pfam PPR repeat family 508 554 IPR002885 -
Bva06g02796 689 Pfam PPR repeat family 67 115 IPR002885 -
Bva06g02796 689 Gene3D Tetratricopeptide repeat domain 2 132 IPR011990 GO:0005515
Bva06g02796 689 Gene3D Tetratricopeptide repeat domain 477 689 IPR011990 GO:0005515
Bva06g02796 689 Gene3D Tetratricopeptide repeat domain 358 464 IPR011990 GO:0005515
Bva06g02796 689 Gene3D Tetratricopeptide repeat domain 255 357 IPR011990 GO:0005515
Bva06g02796 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Bva06g02796 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Bva06g02796 689 Gene3D Tetratricopeptide repeat domain 139 254 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02796 Bva-Chr6 17563025 17565094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02796 1 689 Glycoside Hydrolase AT3G49170 29.420 9.46e-110 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02796 - - gmx:100780678 986.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02796 06 17563025 17565094 Bva06g02796 06 17563025 17565094 ECH