Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02777 ATGGAAAACACCGACGTTTTCTTGGGCTTACACGACTTCCTCGAGCGGATGCGCCAACCCTCCGCCGCCGATTTTGTCAAAGCAATTAAAAGttttattgtgtcattttcaaataatgcACCTGATCCAGATAGGGACAGTGCCGCGGTACAAGAGTTCTTTGCTAAAATGGAAGCAGCTTTTAGGGCTCATCCACTTTGGGCTGGCTGCTCTGAGGAGGAGCTTGAGAGTGCCGGTGAGGGTCTGGAGAAGTATGTAATGACCAAGTTATTTACCCGTGTCTTTGCTTCACTTCCAGATGATGTAAAACTTGATGATCAACTTTCTGAAAAGATGGCTTTGATTCAACAGTTTATTCGACCAGAGAATCTAGATATCAAGCCAACCTTTCAGAATGAAACATCATGGCTGCTTGCACAGAAAGAATTGCAAAAGATTAACATGTACAAGGCACCAAGAGACAAAGTTGTATGTATCCTGAATTGTTGCAGAGTTATCAATAACTTGCTGGTGAATGCCTCTGTTACTTCAGATGGGAATCCTCCTGGGGCCGATGAATTTCTTCCTGTGCTAATTTATGTTACTATAAAGGCAAACCCGCCGCAGCTACACTCAAATCTGCTTTATATACAAAGATTTAGACGTCAATCTCGATTGATTGGAGAAGCAGCATACTATTTTACAAACATTCTCTCTGCCGAATCCTTCATCTCAAACATTGATGCCAAAGCCCTTTCACTGGATGAAGCTGAGTTTGAGAGAAATATGGAAACTGCCCGTGCCCTTCTTTCTGGGCTTTCAACTGATTTTCAAGATCACTCCACTTTACCTGATCAAAATTCTGGGCACCTTCCAGCAGCAGAACCTATCAGACACAAAAATAAAGCTTTGAATGATATTAAGGACCCAGCTTTAGGAACTGCATCATCTGAAGCCAAATCTGATAGTAAGAAAGTAATTTTTGCAGATGAGTTACCGATCACAAAAGTTCCGTCTCTCTCGGATTTGGAGAATAAAGGAGCAACTATGCTTTTGAAGGAGGATCAAGTGAACAAAGTTTTCAAGGAGTATCCATATTTGTTTGCTCATGTAGGTGACCTAACAGTCAGTGATGTGGAAGATCTGctaaataattacaaacaaCTTGTTTTCAAGTATGTATGTCTTTCAAAGGGATTAGGTGTTTCTCCTGCACCCCATCCTCCATCTAATTCACAAAATAATGCCCAACAACATTCTGAAACTACAATAGAGTCTTCAGATAGTGGACCTGAAGAGCCAGATGATAAGTCACAAAAATCTACTCATAGGACAGAGGATAGTCCAGGTACAGTTTCAGTTATTGaggagaaaatttttgaatccAATCTGCCACAGGATGAAGCATTAGCACCTCAGGGCGGGGGCGAAGTGGAGGCATCTAACTG 1427 0.405 MENTDVFLGLHDFLERMRQPSAADFVKAIKSFIVSFSNNAPDPDRDSAAVQEFFAKMEAAFRAHPLWAGCSEEELESAGEGLEKYVMTKLFTRVFASLPDDVKLDDQLSEKMALIQQFIRPENLDIKPTFQNETSWLLAQKELQKINMYKAPRDKVVCILNCCRVINNLLVNASVTSDGNPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRRQSRLIGEAAYYFTNILSAESFISNIDAKALSLDEAEFERNMETARALLSGLSTDFQDHSTLPDQNSGHLPAAEPIRHKNKALNDIKDPALGTASSEAKSDSKKVIFADELPITKVPSLSDLENKGATMLLKEDQVNKVFKEYPYLFAHVGDLTVSDVEDLLNNYKQLVFKYVCLSKGLGVSPAPHPPSNSQNNAQQHSETTIESSDSGPEEPDDKSQKSTHRTEDSPGTVSVIEEKIFESNLPQDEALAPQGGGEVEASN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02777 475 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Bva06g02777 475 Gene3D VPS9 domain 99 265 IPR037191 -
Bva06g02777 475 MobiDBLite consensus disorder prediction 397 475 - -
Bva06g02777 475 MobiDBLite consensus disorder prediction 423 437 - -
Bva06g02777 475 PANTHER BNAC09G47180D PROTEIN 1 411 - -
Bva06g02777 475 Gene3D - 17 97 - -
Bva06g02777 475 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Bva06g02777 475 MobiDBLite consensus disorder prediction 399 420 - -
Bva06g02777 475 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Bva06g02777 475 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Bva06g02777 475 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 411 IPR045046 GO:0005085|GO:0016192
Bva06g02777 475 SMART vps9_2 135 254 IPR003123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02777 Bva-Chr6 17440559 17445285 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02777 K20131 - gmx:100810958 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02777 06 17440559 17445285 Bva06g02777 06 17440559 17445285 ECH