LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva06g02672	ATGCTTTCATTGGTGCGGAGGGGGAGAAGAATGAGATGCCTTTACTTCACCCATTCACTTTCTCAAACTCATAATTCCTTCTATTGCACCAAGTTCTACAGCTCTTCCCCTTTCCAGAACCCTCTCTTTAAACTCTGCTCTGGTATTCTAAGACCAATTTCCAGACCCCCAATTCGTGCTTTCTGTACCACGTCCACCGAAGCGAAAGCTGACAGGGTAGCTGCGTTGAAACAAACCATGGAGGCCCCCGATGCCATATCGTACCTAACGCAGAGAGAAGCCGCCGAGATAGATGAGACACTCATGGGTCCTCTTGGGTTTAGTGTCGACCAATTGATGGAATTGGCCGGTTTGAGCGTTGCCACATCCATAGCCCAGgTTTATAAACCAAGTGAGTATGGCCGTGTTCTTATTATCTGTGGTCCTGGGAACAATGGTGGCGACGGTCTGGTGGCTGCCCGTCACCTGTATCACTTTGGATATAAGCCCTTCATCTGCTATCCTAAACGTACCGCCAAACCTCTCTATACTGGATTGGTTACTCAGCTTGAATCATTGTCAATCCCATTCTTATCGGTGGAAGACCTATCATTGGACTTGTCAAAAGACTATAAAGTTATAGTTGATGCAATATTTGGATTCTCTTTTCATGGTACTCCAAGGCCACCTTTTGATGATTTGCTCAAAAGACTTGTTTCTTTGCATAATTCTGATCAAATTCATCAAAGAAGATCGGTTATAGTCTCTATAGATATTCCTTCTGGCTGGCATGTTGAAGAAGGTGATGTTCATGGTGAAGGCATTAAACCTGACATGTTGGTTTCTCTGACAGCCCCAAAATTATGTGCCAAGAAATTTACTGGTCTGCACCACTTCCTAGGCGGCAGATTTGTTCCACCCTCTATTGCTGAGAAATATAAGCTTCATCTGCCACCTTATCCTGAAACCTCCATGTGTGTCCGAATTGGCAAGCCACCTCAAATTGATATTTCTGCTCTGAGAGAGAACTATATCTCTCCAGAGTTTCTGGAAGAGCAGGTGGAGGCAGATCCCATTAAACAGTTCCTTAAATGGTTTGATGATTCATTGACCGTTGGATTGAGGGAACCAAATGCTATGGCCCTAACAACAGTAGGAAAGGATGGAAAACCCTCATCACGAATGGTGCTGCTAAAGGGTGTTGACAAGGAAGGGTTTGTGTGGTACACAAACTATGAGAGTCGCAAGGCACGTGAATTAGCTGAAAATTCCCATGCGTCACTTCTTTTCTATTGGGATGGTCTGAACCGCCAGgTACGAGTAGAGGGATCTGTTAAGAAAGTCTCTGAAGAGGAATCAGAGCAGTATTTCCACAGCCGTCCTCGAGGAAGTCAGCTTGGAGCAATTGTTAGCAAGCAGAGTACTGTAGTGCCTGGAAGGCATGTTCTTTACCAGGAGTACAAAGAATTGGAGCAAAAGTTTGCTGACGGAAGTTTGATCCCTAAACCTAAGAACTGGGGAGGATACAGGCTAATACCGcaactttttgaattttggcaAGGACAGCCTTCTCGCTTACATGACAGGCTGCAGTATTCTCCCTATGAGATTAATGGACAACTAGCATGGAAGATTGAGAGGTTGGCCCCCTG	1631	0.4464	MLSLVRRGRRMRCLYFTHSLSQTHNSFYCTKFYSSSPFQNPLFKLCSGILRPISRPPIRAFCTTSTEAKADRVAALKQTMEAPDAISYLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAQVYKPSEYGRVLIICGPGNNGGDGLVAARHLYHFGYKPFICYPKRTAKPLYTGLVTQLESLSIPFLSVEDLSLDLSKDYKVIVDAIFGFSFHGTPRPPFDDLLKRLVSLHNSDQIHQRRSVIVSIDIPSGWHVEEGDVHGEGIKPDMLVSLTAPKLCAKKFTGLHHFLGGRFVPPSIAEKYKLHLPPYPETSMCVRIGKPPQIDISALRENYISPEFLEEQVEADPIKQFLKWFDDSLTVGLREPNAMALTTVGKDGKPSSRMVLLKGVDKEGFVWYTNYESRKARELAENSHASLLFYWDGLNRQVRVEGSVKKVSEEESEQYFHSRPRGSQLGAIVSKQSTVVPGRHVLYQEYKELEQKFADGSLIPKPKNWGGYRLIPQLFEFWQGQPSRLHDRLQYSPYEINGQLAWKIERLAP	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva06g02672	543	Hamap	NAD(P)H-hydrate epimerase [nnrE].	90	325	IPR004443	-
	Bva06g02672	543	Hamap	Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH].	336	543	IPR000659	GO:0004733\|GO:0008615\|GO:0010181
	Bva06g02672	543	Gene3D	-	85	327	IPR036652	-
	Bva06g02672	543	TIGRFAM	pdxH: pyridoxamine 5'-phosphate oxidase	326	543	IPR000659	GO:0004733\|GO:0008615\|GO:0010181
	Bva06g02672	543	TIGRFAM	yjeF_nterm: YjeF family N-terminal domain	91	286	IPR004443	-
	Bva06g02672	543	Pfam	Pyridoxamine 5'-phosphate oxidase	367	445	IPR011576	-
	Bva06g02672	543	ProSitePatterns	Pyridoxamine 5'-phosphate oxidase signature.	509	522	IPR019740	GO:0016638
	Bva06g02672	543	PANTHER	NAD(P)H-HYDRATE EPIMERASE	80	527	IPR032976	-
	Bva06g02672	543	SUPERFAMILY	YjeF N-terminal domain-like	87	316	IPR036652	-
	Bva06g02672	543	Pfam	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region	499	543	IPR019576	-
	Bva06g02672	543	ProSiteProfiles	YjeF N-terminal domain profile.	94	310	IPR004443	-
	Bva06g02672	543	Pfam	YjeF-related protein N-terminus	110	282	IPR004443	-
	Bva06g02672	543	Gene3D	-	337	532	IPR012349	-
	Bva06g02672	543	PANTHER	NAD(P)H-HYDRATE EPIMERASE	80	527	-	-
	Bva06g02672	543	SUPERFAMILY	FMN-binding split barrel	344	543	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva06g02672	Bva-Chr6	16915965	16921194	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva06g02672	K23998		-	gmx:100795497	837.41

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva06g02672	06	16915965	16921194	Bva06g02672	06	16915965	16921194	ECH