Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02660 ATGGAGTCGTTTCCTTTTCACGATGGCAATATACACAATTTGCTTGAGAGCAGATACCTCGACAATCGACTAGATATCAATCACAGTTTGCCAATGCACTCCTCATTGATTCGGAGGCTttctcaagaaagaaaattagagGGTCATAATGGTTGCGTTAACGCAGTGGCTTGGAATTCCAAAGGTTCACTTTTGATATCTGGATCAGATGACACACGGATCAATATTTCGAGCTATTCCGGTTGGAAACTTTTGCAATCAATTGACACTGGACATTCTGCAAATATATTCTGTACTAAGTTTGTACCTGAAACTTCTGATGAGCTTGTGGTCTCTGGAGCTGGAGATGCTGAAGTccgattatttaatttgtcacGCTTAAGTGGGAGTGGATTTAATGATAATGCTATTACTCCATCAGCGCTTTATCAATGTCACACTAGAAGAGTCAAGAAACTGGCTGTTGAAGTTGGAAATCCTAATGTCGTATGGAGTGCTAGTGAAGATGGAACCTTGCGACAGCATGATTTTCGAGAAGGCACGTCTTGTCCTCCAGCAGGATCTTCACACCAAGAGTGTCGCAATATTCTGCTTGACTTGCGGAATGGAGCTAAAAGGTCACTCACTGATCCTCCGAAACAAGTCCTTGCTCTAAAATCTTGTGATATTAGTTCTACTAGGCCACATTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGGTTATATGATAGGAGGATGTTGCCTCCACTGAGCTCCTGTCGGAAAAGAATGCCACCACCTCCTTGTGTTAATTATTTCTGCCCAATGCATCTTTCTGATCGGGGACATCCAAGTTTGCACTTAACGCATGTTACATTCAGTCCCGATGGAGATGAGGTTCTACTTAGCTATGGTGGCGAGCATGTTTACCTGATGAATGTGAATCACTCTGGGGAGAATGTGATGCAATATACTTCAGGAGATGTTTTGAAACTGATGAATTACTCCCCAACAGTTAATGGAGTGGAAATGGAGCTTCCTATGTACAAAGCCCTCCCAAAGggattttctaataaaagtaatattgcTGCTAAGCTTGACAAGTGCAGGGATTTAATTCAATTCGCCAAAACATGCATTGATGAGGGGTCATACTATAGTGGAATTGAGGCATGTAATGAAGTTCTGCATGGCTATGGTCGTTATGTAGGTCCTGTGCTAAAACATGAATGTCTATGTACCCGTGCTGCACTGTTGCTTAagCGGAAGTGGAAAAATGATGCTCACATGGCCTTAAGAGATTGCTATCATGCTAGGCAAATTGATAATACCTCTTACAGACCACTCTATTGTACGTCAGAAGCATTATCACAGTTAGGTAGACACGAAGAAGCCTTGGATTTTGCTGTTGCTGCTCACATGTTGGCCCCATCCATATCTGAAGTAGTAGAAAAATTGGAGAATGTAAAGAAAGATATTGCTTCAGCTGAAGCTGAAAAAAACAAGACAAATGATGGAGCATCAAGGTTTGAGAGTCAAGGTGGAAGAATATTATCATTGAGTGACATACTCTACCGCTCAGAGGCTAATAGTGATGCTTCACAAGATGACAGAGATGATTCTGATTATGGTGAGGAATTGGAGTTAGACTTTGAAACATCAATTTCAGGTAATGAGGGGCGTGATGTTGAACCCAATACTCTTCGTGGgagtttaaatttgagaatCCATCGAAGAGGTGACTCCAGAGATAATGCCGGTGCAAGTGGCTCATGTGATTCGCCCTCAGCATCATCACAGAATGATAAAGCACGATATCAGCCTGAAGCAGCTATTGATATGAAGCACAGATATGTTGGGCACTGTAATGTTGGAACTGATATAAAACAAGCCAGCTTTCTTGGTCAAAGagGTGAATATATTGCCAGTGGAAGTGATGATGGAAGATGGTTTATTTGGGAAAAACGAACTGGAAGAGTCGTAAAAATGCTCAACGGTGATGAAGCTGTTGTCAATTGTGTACAGTGCCATCCATTTGATTGTGTTGTGGCAACCAGTGGTATAGATAATACCATAAAGATTTGGACTCCAACTGCTTCTGTTCCATCCATTATAGCTGGTGGATCATCAGGACCAGAAACTGCAGATGTATTGGTTGCTATGGAGAACAATCAACGAAAATTATGCCGTAATCGTGATTCTATCCTGCCTTTTGAACTTTTGGAACCATTCAGAATGCACGAGTTTCCAGAAGGATCATTGCGTTTGCGTCCATTTGAATGCGCCCAGAGTTA 2276 0.4082 MESFPFHDGNIHNLLESRYLDNRLDINHSLPMHSSLIRRLSQERKLEGHNGCVNAVAWNSKGSLLISGSDDTRINISSYSGWKLLQSIDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLSGSGFNDNAITPSALYQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRNGAKRSLTDPPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRKRMPPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGDEVLLSYGGEHVYLMNVNHSGENVMQYTSGDVLKLMNYSPTVNGVEMELPMYKALPKGFSNKSNIAAKLDKCRDLIQFAKTCIDEGSYYSGIEACNEVLHGYGRYVGPVLKHECLCTRAALLLKRKWKNDAHMALRDCYHARQIDNTSYRPLYCTSEALSQLGRHEEALDFAVAAHMLAPSISEVVEKLENVKKDIASAEAEKNKTNDGASRFESQGGRILSLSDILYRSEANSDASQDDRDDSDYGEELELDFETSISGNEGRDVEPNTLRGSLNLRIHRRGDSRDNAGASGSCDSPSASSQNDKARYQPEAAIDMKHRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKRTGRVVKMLNGDEAVVNCVQCHPFDCVVATSGIDNTIKIWTPTASVPSIIAGGSSGPETADVLVAMENNQRKLCRNRDSILPFELLEPFRMHEFPEGSLRLRPFECAQS 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02660 758 Pfam WD domain, G-beta repeat 610 647 IPR001680 GO:0005515
Bva06g02660 758 Pfam WD domain, G-beta repeat 44 76 IPR001680 GO:0005515
Bva06g02660 758 Pfam WD domain, G-beta repeat 659 689 IPR001680 GO:0005515
Bva06g02660 758 SUPERFAMILY WD40 repeat-like 39 689 IPR036322 GO:0005515
Bva06g02660 758 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 23 757 - -
Bva06g02660 758 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 23 757 IPR045151 -
Bva06g02660 758 SMART WD40_4 209 244 IPR001680 GO:0005515
Bva06g02660 758 SMART WD40_4 39 78 IPR001680 GO:0005515
Bva06g02660 758 SMART WD40_4 81 123 IPR001680 GO:0005515
Bva06g02660 758 SMART WD40_4 605 648 IPR001680 GO:0005515
Bva06g02660 758 SMART WD40_4 136 176 IPR001680 GO:0005515
Bva06g02660 758 SMART WD40_4 265 307 IPR001680 GO:0005515
Bva06g02660 758 SMART WD40_4 651 690 IPR001680 GO:0005515
Bva06g02660 758 Gene3D - 33 336 IPR015943 GO:0005515
Bva06g02660 758 SUPERFAMILY TPR-like 363 484 IPR011990 GO:0005515
Bva06g02660 758 Gene3D Tetratricopeptide repeat domain 353 507 IPR011990 GO:0005515
Bva06g02660 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 76 IPR001680 GO:0005515
Bva06g02660 758 Coils Coil 473 500 - -
Bva06g02660 758 MobiDBLite consensus disorder prediction 581 599 - -
Bva06g02660 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 658 689 IPR001680 GO:0005515
Bva06g02660 758 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 76 - -
Bva06g02660 758 MobiDBLite consensus disorder prediction 545 599 - -
Bva06g02660 758 Gene3D - 532 696 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02660 Bva-Chr6 16858743 16867033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02660 610 742 Miscellaneous Gene Families AT5G08390 26.667 1.13e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02660 K11807 - gmx:100793917 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02660 06 16858743 16867033 Bva06g02660 06 16858743 16867033 ECH