Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02647 ATGCGTGTTACCGGGGATCTAGGGTTTTCGAGCCTGATCCTTATGGTTGTTTGTTTGGTTATACCCGTGATCGGGTTTGTAATTCGCCGGAAATTGCAGCATGCAGTGGCCAGAAAGGAGGAGATCAAGAGGCTTTTGATTTTGGCATCAGAGGAGGCTGCTAGGGCCGAGCTCGAGGCTTCCTATGCGTACGGCAGCGTTTTTGTTCCTAAGACTAATCAATGCGCAGTGTGTTATTGCTCCACCACAAGGCGGTGTTCCCAGTGCAAAGCGGTTCGCTACTGCTCTGGTGACTGCCAAATCATTCATTGGCGTCAAGGTCACAAGGATGAATGCTGTCCTCCCAGATCCAATCACCAGGGTGATGATTCTGTAAGTGACTTTGGCAAGAAGGCAGCAGAGCAAGACCACATTGGAATTCATGCTGAGGTTAGTAGTCTGGGCAAGAAGGCAACAAAACAAGATCACTTTGGAATTCATGTTGAGAACTCCATGTTTGAGGTTGCACATTCTAAACTATCCACTAAGAAACCCTCATTAATTGATAGTAGTCGTGCTCCTGAAGTTTCATGTGGAAAGGATGACAATGTTAGAGCTGAGCCTTCTGCTGATGGAAATATAGCAGATTCTAATTCTGAATCATCTAGTAACTCATTTTCTGGATTCTCAGCTTCCAATACTTCTAGCGAATCATCTGATGATGCCTCTGTCTGCGAGAGTATCATCTCATATGAGCTTGAGAGGCCAGAGGAACATAATTTTGTGGATCCCACCCTTCACATGCTTGATACCACTTCAAGTGATAATAGCACAGGTGTGACCATGTCACCGTCACCAAAGTTTGCTACTTTGCTTGATTCTGTGGATGTTTTTTCTACAATgcacaaattaaatcaaactaGACCTGGTTTGAGTGAAGAAGAGAGTAAGCTTGCATCAAATGGTACTTCAGGTTTGAGAAAGTGCAAAGGGGCAATCAATGAGCCTGGTACGGTGTCTGCTGGTTTCTGGGATAAAACTCTTAATTCCGAGGGGTGTACAGGTGATGCTGATGGTGACTCTCTTTCTTCCCATTCCAATATATCCACTGGAAATAAGAAAGCAGAATCTGGATCCTCGTTGTGCTTTTCATTCAAAACCATGGCTCCCTTAGATGTGCGAGATCCTCAGGCAAAAAATTCTGTTTCTGATCATTCTTCTCTGAACTCTGTTGAGAATAATATCCCAAGTGCAGGATCAGCATTACCAGATGGCAGAAAGGAGTCTTCAAAACTGAGGAGTACATCCTCCATAAACAGCAAAGGGCCCAATATCTTGAATTTTGGTGATGCCAGTCATTCTGATCAGTTGGAGTCTAGACCTTATATCCAACAATTGTCTAGTTTAGGTGGAGATTCTGGGTTTGCTGATGCTTCAACCACCAGAAAGTTGCAATCATTAGGGTCAAAGGCTTCAAATCATGTTGCGGATGACCCAGGCAGCAATTCACATCAGTTGAAGTCTGTTGAAGTTAGACATATGCCCAATACTGAGTTAGATTCTAGAACCGAAGAGAATACACAATCCAGGACAAAATTTGGGCATAATGGCATTCAATATAGTACTGCTACTTCATCTCAAGTTTCAAGCTGTTCCCCAAATTCTAAGTATGGCTTGAAAACATCTGTATTTAAAGTAGTTGATCAGTTTAGAGGATCTAATCAATCAAAGCGGCCCCCATTAGCTGTTGGGAATGATATTACTGGAAAATACAGTGATAAGGGGCTCTTTCCATACGACTTGTTTGTCAAGctttttaattcaaacaaGGTGGAGTTGCGACCATTTGGTCTCATAAATTGTGGTAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTGGCGTTTTCACCTCCCCTGACTGCTTATTTCCTTCAAGGACTTCATTCTAAAGCATgcataaagaaaaaatggtgtTTCACCTGTGAGTTTGAAAGTTTGGTTTTGGAgggaaaaaaagggaaatcTCCACTCTCTCCTATGGGCATTCTCTCCCAACTACAGAATATTGGGAGTCAACTTGGtaatggaagagaagaagatgcaCATGAATTTCTAAGGCATGTTATTGACACAATGCAATCTATTTGCCTTGTGGAAGCCGGGATTAATGCATCAGGCTCATTGGAAGAGGAAACAACTTTAATGGGTCTAACATTTGGAGGCTACCTTCGGTCAAAGATAAAATGCATGAAATGCGGGGGAAAGTCTGAGCGTCAGGAGAAGATGATGGATTTAACTGTTGAGATTGGAGGAGAGATAGGAACCCTGGAGGAGGCTTTAAGACAATTTACAAAAACTGAGACTCTGGATGGAGAAAACAAGTACCATTGCGTCAGGTGTAAATCTTATGAGAAGgccaagaagaaaatgacaatttcAGAGGCACCTAATGTTCTTACTGTTGCATTGAAGAGATTTAAGTCTGGCAGATTTGGGAAGCTTAATAAGCCTGTTCAGTTTCCTGAAATACTTGACCTGGCGCCTTTTATGAGCGGGACTAGTGACAAATCACCTATATACAGGCTCTATGGGGCAATTGTTCACTTAGATGTCATGAATGCTGCATTTTCGGGTCACTATGTGTGCTACGTGAAGAATTTCCAGAACAAGTGGTTCAAGGTTGATGACAGCATGGTGACAGCTGTTGAATTGGAGAGAGTCTTGACAAAAGGGGCATATATGCTACTCTATGCAAGGTGCTCACCAAGAGCCCCAAGATTAATAAGAAACATGATAGTATCTTCTGATTCAAAAAGTAAAGCTGCTAATGGAAGGACTACTCTTTTGAAATCAAGATTTGTATCTGCAAATTCTGGTGTTGCTGAATATTTCAATGGTTCGGTCTCTCCAGATGGTTCATCCACCTTAGACTCTTTCTATTCAAAGTTTCATCGCCTGAGAAGGATTTTGGAAGAAGACTCATCAAGTGATAATTCATCCCTTATCAGTAATAATTCTGATGAAGGTTCTTGCAGCACTGACAGCACCCGTGATTCAACCAGCACGGAGGACTTCTCGGATTATATTTTTGGTGATTCAGTACTGGTCGGCAACGGCCTTTGGAGGAATTCTGATTCTGACACTTGttcatcatcttcctcttctccCATCTACTCTAGACATTCACCTCTTGCTGATATGGACCGGTATGCTTCGGGAGATTCACGTATGGAGGTAAATGGTCTTTCGTATAGGCGCTCTACTGATATCAGCGGAGTGGTGGGAAGGGAGGAGGAAGGTGTTTCTATTTGGCATTCTGACCCAAGTATGGAGCATAGCAAGTTAGATAGTAGTAGAAGTAGCGTTAGTAGTTTTAGGAAGACTGACTCTTCTCAGAGTTTAGAATCTAACCAATTTAATGATAGAAAGTCGAGGGAAAGAACGggtta 3431 0.4101 MRVTGDLGFSSLILMVVCLVIPVIGFVIRRKLQHAVARKEEIKRLLILASEEAARAELEASYAYGSVFVPKTNQCAVCYCSTTRRCSQCKAVRYCSGDCQIIHWRQGHKDECCPPRSNHQGDDSVSDFGKKAAEQDHIGIHAEVSSLGKKATKQDHFGIHVENSMFEVAHSKLSTKKPSLIDSSRAPEVSCGKDDNVRAEPSADGNIADSNSESSSNSFSGFSASNTSSESSDDASVCESIISYELERPEEHNFVDPTLHMLDTTSSDNSTGVTMSPSPKFATLLDSVDVFSTMHKLNQTRPGLSEEESKLASNGTSGLRKCKGAINEPGTVSAGFWDKTLNSEGCTGDADGDSLSSHSNISTGNKKAESGSSLCFSFKTMAPLDVRDPQAKNSVSDHSSLNSVENNIPSAGSALPDGRKESSKLRSTSSINSKGPNILNFGDASHSDQLESRPYIQQLSSLGGDSGFADASTTRKLQSLGSKASNHVADDPGSNSHQLKSVEVRHMPNTELDSRTEENTQSRTKFGHNGIQYSTATSSQVSSCSPNSKYGLKTSVFKVVDQFRGSNQSKRPPLAVGNDITGKYSDKGLFPYDLFVKLFNSNKVELRPFGLINCGNSCYANAVLQCLAFSPPLTAYFLQGLHSKACIKKKWCFTCEFESLVLEGKKGKSPLSPMGILSQLQNIGSQLGNGREEDAHEFLRHVIDTMQSICLVEAGINASGSLEEETTLMGLTFGGYLRSKIKCMKCGGKSERQEKMMDLTVEIGGEIGTLEEALRQFTKTETLDGENKYHCVRCKSYEKAKKKMTISEAPNVLTVALKRFKSGRFGKLNKPVQFPEILDLAPFMSGTSDKSPIYRLYGAIVHLDVMNAAFSGHYVCYVKNFQNKWFKVDDSMVTAVELERVLTKGAYMLLYARCSPRAPRLIRNMIVSSDSKSKAANGRTTLLKSRFVSANSGVAEYFNGSVSPDGSSTLDSFYSKFHRLRRILEEDSSSDNSSLISNNSDEGSCSTDSTRDSTSTEDFSDYIFGDSVLVGNGLWRNSDSDTCSSSSSSPIYSRHSPLADMDRYASGDSRMEVNGLSYRRSTDISGVVGREEEGVSIWHSDPSMEHSKLDSSRSSVSSFRKTDSSQSLESNQFNDRKSRERTG 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02647 1143 Pfam Ubiquitin carboxyl-terminal hydrolase 609 911 IPR001394 GO:0004843|GO:0016579
Bva06g02647 1143 SUPERFAMILY HIT/MYND zinc finger-like 70 115 - -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 467 503 - -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 299 316 - -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 425 445 - -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 176 234 - -
Bva06g02647 1143 Pfam MYND finger 75 112 IPR002893 -
Bva06g02647 1143 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 609 914 IPR028889 -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 350 371 - -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 504 522 - -
Bva06g02647 1143 Gene3D Cysteine proteinases 601 927 - -
Bva06g02647 1143 ProSiteProfiles Zinc finger MYND-type profile. 75 112 IPR002893 -
Bva06g02647 1143 Gene3D - 68 116 - -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 205 234 - -
Bva06g02647 1143 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 19 1129 - -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 393 410 - -
Bva06g02647 1143 SUPERFAMILY Cysteine proteinases 605 917 IPR038765 -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 1109 1132 - -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 467 526 - -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 990 1016 - -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 299 323 - -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 1096 1143 - -
Bva06g02647 1143 MobiDBLite consensus disorder prediction 389 445 - -
Bva06g02647 1143 Coils Coil 39 59 - -
Bva06g02647 1143 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1129 - -
Bva06g02647 1143 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 610 625 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02647 Bva-Chr6 16781855 16788307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02647 541 918 Miscellaneous Gene Families AT4G31670 47.680 3.83e-124 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02647 K11855 - gmx:100795674 1253.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02647 06 16781855 16788307 Bva06g02647 06 16781855 16788307 ECH