Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02630 ATGATACGCGTTCCGCCCACTCACTCGAGCGGCAACAGATTCCACCACTCTCAAGACACGCAGTTGTTCATAATTCATACTGTTCTTGTCTATGCTCGGCACTGCTACACTACATACATTACAGAGTCCAAACCAAACCCTCAAGCGGTGCCTACTGGAGTTGTCAAGGCTATGCCCACTAACGAAGATTTCCAAGGTGTTTCAAACTGCTATGTGTTCAAGAGTCGATTGCAGGAGTATGCTCAGAAGGTGGGACTTCCTACACCTGTCTATGAAACTATCAAGGAAGGACCTTCCCATGAACCTTCTTTCAGGTCAACAGTGATAGTGAATGATGTTAGGTACGATTCCTTGCCTGGATTTTTCAACCGTAAAGCAGCAGAGCAGTCAGCTGCTGAAGTTTCCCTATTGGAGTTGGCGAAATCTGGTGAAGTTAATCAATCCATCACTCAACCAGttCATGAAACAGGATTATGCAAGAATTTACTTCAGGAATATGCACAGAAGATGAATTATGCAATGCCCTTGTATCAGTGCAAAAAGGATGAGTCACCGGGTCGAGCATCATCTTTTTCATGTACTGTTGAGATCGGAGGAATTCGTTATATTGGAGCAGcagcaaaaacaaagaaagaagctgAGATAAAAGCTGCTAGAACTGCCTTATTAGCCATTCAGTCAAGTGCATCCAACTCTTCCGAAAAGCAAGTTCGCCAATCTCAGTTAACTGTCATTCCATGCAAGAAAAGGGGGGCAGAATCAGTTGCCAATGCTGATGAGAATAATAATGCAAATATCCGAAAGCCTAAGAAAGCACGacttaaaaggaaaacatgGAAAAGGAAACCTTCTGGAGACAAGATGAGACATGAACACATTGAAAATGTGAGCCCCCTGGAAACAAATATCACTCATGAGGTAGAATCACATGCAAATGTAAACGATGAGTCTGGTGTGCAGGCGATGGAGTCCAGACCATTTGCTGCAGAAGCCGTCAAGAATTTCGAGAATGGAAAATCAATTGATTctcaaaatgagaaagaaatgtTTGCTGGGAAAGCTTCTTTGGCTCTGAACAGCGATCCGATTTCTGAGAATCAGAAGAAGTCGATTGAATTGCATTCCAGTGACAGCACTCTCGGAAATGTTGCCATAGAAGTAACTTCTTTGTCTAATGGAGACACAAGGGAAAAGAGTATGGATTTGAACAAACAGCAAGACAGCGGAGAAATGGTCAATGTGGCAAATGTTTGTATTGTGGGTGGATTGAAGATTTCTAGTATCTTATCCGACTTGAACCCATTGGAAGAAAAGATCCAAGCAGTAACCAAGAGTAATTA 1340 0.4097 MIRVPPTHSSGNRFHHSQDTQLFIIHTVLVYARHCYTTYITESKPNPQAVPTGVVKAMPTNEDFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSAAEVSLLELAKSGEVNQSITQPVHETGLCKNLLQEYAQKMNYAMPLYQCKKDESPGRASSFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSSASNSSEKQVRQSQLTVIPCKKRGAESVANADENNNANIRKPKKARLKRKTWKRKPSGDKMRHEHIENVSPLETNITHEVESHANVNDESGVQAMESRPFAAEAVKNFENGKSIDSQNEKEMFAGKASLALNSDPISENQKKSIELHSSDSTLGNVAIEVTSLSNGDTREKSMDLNKQQDSGEMVNVANVCIVGGLKISSILSDLNPLEEKIQAVTKSN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02630 446 SMART DRBM_3 159 226 IPR014720 -
Bva06g02630 446 SMART DRBM_3 73 140 IPR014720 -
Bva06g02630 446 MobiDBLite consensus disorder prediction 268 283 - -
Bva06g02630 446 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 158 227 IPR014720 -
Bva06g02630 446 PANTHER RIBONUCLEASE III 58 376 IPR011907 GO:0003723|GO:0004525|GO:0006364
Bva06g02630 446 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 1 58 376 IPR031147 GO:0003725
Bva06g02630 446 SUPERFAMILY dsRNA-binding domain-like 70 139 - -
Bva06g02630 446 MobiDBLite consensus disorder prediction 256 290 - -
Bva06g02630 446 Pfam Double-stranded RNA binding motif 74 139 IPR014720 -
Bva06g02630 446 Pfam Double-stranded RNA binding motif 160 223 IPR014720 -
Bva06g02630 446 SUPERFAMILY dsRNA-binding domain-like 160 227 - -
Bva06g02630 446 CDD DSRM_AtDRB-like_rpt1 72 140 IPR044450 GO:0003725
Bva06g02630 446 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 72 141 IPR014720 -
Bva06g02630 446 Gene3D - 155 227 - -
Bva06g02630 446 Gene3D - 73 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02630 Bva-Chr6 16667861 16671332 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02630 - - gmx:100782651 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02630 06 16667861 16671332 Bva06g02630 06 16667861 16671332 ECH