Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02615 ATGGCTTCTTTGCCTTCGGTAACTGTCGGTGGAACTCCTAAGCTGGACCCAGAATTCAGAAAGCAACCGCCAAATTCCTTCCTCACTGAGAAGAGTCCAAGCATTTCTTTCCAGAAAAGTTACGGAGTCACGCATTTAGATGGAAGTTTAGATTCGAGAAATCTGGACTTCCGGGAAGCACTTTCATTGATACAACAGGGCACAAATGTGGAAACATCTTTCTACATTCCCTTATTGCAAGAATGCATAGACAAGAATTCTCTTTCAGAGGCACAAATTGTTCATGGACACATCATAAAAACTGGTACACATGAAGACGTTTTTGTCATGACATTTCTGGTCAACGTTTATGCTAAATGTGGAAACATGGAGAGTTCTCGCAAAGTTTTTGACAAAATGCCCAGAAGAAACGTTGTTACATGGATCAAATTAATGGCGGGTTACATTCAGAATTCACGGCCAGAGCATGCTATCCATGTCTTCCAAAAAATGTTGGATGAAGGGGTTTACCCTTCCAGTTACACTCTTGCAGTTGCTCTAAGTGCATGCTCTTCCTTGCATTCTGTAAAGTTAGGGGACCAGTTTTATGCTTACATAATCAAATACCATATTGACTCTGACACAAGCATTGGCAATGCCCTCTGTAGCTTGTACTCCAAGTGTGGAAGACTAGAATCTGCTCTAAAAGCTTTTCgcagaataaaagaaaaaaatgttatttcatgGACCGCTGCTATTTCTGCTTGCGGTGACAACGGTGAAGCTATAACAGGTTTGAGACTTTTTATTGAGATGCTTTCTGAGGACATAGAACCTAACGAGTTAACTTTAACCAGTGTCTTGAGCCTATGCTGTGGAATTCTCTCCTTAGAAATTGGGACTCAGGTTCACTCATTGAGTATCAAACTTGGCTATGAATCAAACCTGCGTATCAGGAATTCTTTAGTGTATTTATATCTCAAATGTGGTCGGATCAATGAGGCTGACATAATGTTTGATAGAATGGATGATACCAGTTTGGTTACATGGAACGCAATGATTGCTGGACATGCCCAAATGATGGAAATCGCAAGAGATAATCTTTCTGCATACCAAAGTGGAATTGAAGCACTGAAccttttcttaaaattgaaTGGTTCAGGAATGAAACCTGACCTATTTACATTCTCAAGTGTCTTTCGTGTTTGTTGTGGACTAGTGGCTTTAGAACAGGGGGAACAGATTCATGCTCAGACCATTAAAACGGGAGTGAGAAGGATAATGGAAGAGGAGAATAGTGGAAAATTGAAGGACTGGAGCTGGATTAGCATCAAAGACAAGGTTTATTCATTTGAACCCAATGACAAGGCACATCCTCAGAGTTCACTTCTATATTCGTCATTGGAAAATTTACTAGCCAAAGCGAAGACTGTAGGTTATGAGTCACTAGAAGTAGAGAGTATGGAAATGGGTGACGAAGAGGACGAAGGAAGGACACCATCTTCTACCATTTTTGAGAGCGAAAACCTAGTCGTTGCGCTTGGGTTGGAGAATTTGCCTAACTCTTCCCCAATAAGAGTTATCAAGAATACCATAATGAGCAGGGATAgccataattttattaagtacATATCAACACTAACTGATAGGGAAGTAATCATTCGAGATAGCAAGCGGCTACATAAATTTGTCAATGGACAATGCTTATGTGGGGATTTTGGCGTATTTATATG 1712 0.3925 MASLPSVTVGGTPKLDPEFRKQPPNSFLTEKSPSISFQKSYGVTHLDGSLDSRNLDFREALSLIQQGTNVETSFYIPLLQECIDKNSLSEAQIVHGHIIKTGTHEDVFVMTFLVNVYAKCGNMESSRKVFDKMPRRNVVTWIKLMAGYIQNSRPEHAIHVFQKMLDEGVYPSSYTLAVALSACSSLHSVKLGDQFYAYIIKYHIDSDTSIGNALCSLYSKCGRLESALKAFRRIKEKNVISWTAAISACGDNGEAITGLRLFIEMLSEDIEPNELTLTSVLSLCCGILSLEIGTQVHSLSIKLGYESNLRIRNSLVYLYLKCGRINEADIMFDRMDDTSLVTWNAMIAGHAQMMEIARDNLSAYQSGIEALNLFLKLNGSGMKPDLFTFSSVFRVCCGLVALEQGEQIHAQTIKTGVRRIMEEENSGKLKDWSWISIKDKVYSFEPNDKAHPQSSLLYSSLENLLAKAKTVGYESLEVESMEMGDEEDEGRTPSSTIFESENLVVALGLENLPNSSPIRVIKNTIMSRDSHNFIKYISTLTDREVIIRDSKRLHKFVNGQCLCGDFGVFI 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02615 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Bva06g02615 570 MobiDBLite consensus disorder prediction 1 25 - -
Bva06g02615 570 Pfam PPR repeat family 136 183 IPR002885 -
Bva06g02615 570 Pfam DYW family of nucleic acid deaminases 497 566 IPR032867 GO:0008270
Bva06g02615 570 PANTHER OS01G0913400 PROTEIN-RELATED 417 508 - -
Bva06g02615 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 136 IPR002885 -
Bva06g02615 570 Gene3D Tetratricopeptide repeat domain 189 291 IPR011990 GO:0005515
Bva06g02615 570 Gene3D Tetratricopeptide repeat domain 59 188 IPR011990 GO:0005515
Bva06g02615 570 Gene3D Tetratricopeptide repeat domain 294 414 IPR011990 GO:0005515
Bva06g02615 570 Pfam PPR repeat 240 269 IPR002885 -
Bva06g02615 570 Pfam PPR repeat 216 239 IPR002885 -
Bva06g02615 570 Pfam PPR repeat 313 335 IPR002885 -
Bva06g02615 570 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 417 508 - -
Bva06g02615 570 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 65 417 - -
Bva06g02615 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Bva06g02615 570 TIGRFAM PPR: pentatricopeptide repeat domain 139 172 IPR002885 -
Bva06g02615 570 TIGRFAM PPR: pentatricopeptide repeat domain 240 274 IPR002885 -
Bva06g02615 570 TIGRFAM PPR: pentatricopeptide repeat domain 113 138 IPR002885 -
Bva06g02615 570 PANTHER OS01G0913400 PROTEIN-RELATED 65 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02615 Bva-Chr6 16512663 16515320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g02615 94 566 Glycoside Hydrolase AT3G49170 27.311 1.07e-53 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02615 - - jre:108981298 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02615 06 16512663 16515320 Bva06g02615 06 16512663 16515320 ECH