Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02600 ATGTGCAATCCAAAGCCTTCTTCAGCTTCCCCATTTCTGTGCCCCACAAAAACCCATCTCTTAAGTTCCCACAAAGTCATGGATCCTGATGATCAAGATAAACTTCATAGGTGGCCAACTCCTAATGAGGTCTTGGAAGAAATCAGAGCCATAGGGAAGATATCAGGCCCAACAGCCATTACTGGTTTGCTGTTATATTCACGAGCTATGATCTCGATGCTCTTCCTTGGCTACCTTGGTGAGATGGAGCTCGCTGGAGGTTCTCTCTCTATCGGATTTGCAAACATTACTGGCTACTCTGTAATCTCTGGATTAGCCATGGGAATGGAACCCATTTGTGGACAAGCTTATGGCGCAAAACAGAGGAAGCTACTTGGCTTAACCCTGCAAAGAACtgtgcttcttcttctctccattTCTATACCCATCTCTTTTATGTGGCTTAATATGAAGAGAATCCTCTTATGGAGCGGTCAAGATGAGGAAATATCATCAATGGCCCagactttcattattttttccattccagacctcttcttcctttcgctCCTCCACCCTCTTCGAATCTACCTCAGGACACAGAACGTCACATTGCCATTAACATACTGTTCAGCCATCTCAGTTCTCCTCCATGTCCCTCTAAATTTCCTTCTAGTAGTTCAATTGAAGATGGGTATTGCAGGGGTGGCCATAGCAATGGTGTGGACTAATCTGAACCTCTTTCTCTtgctttcttcctttgttttcttctcggGTGTATATAAAGATTCATGGGTTATTCCTAGCATGGACTGCATCAGGGGATGGTCCTCTCTGCTTGCACTTGCCGTTCCATCCTGCGTCTCTGTTTGCCTTGAGTGGTGGTGGTACGAGTTCATGATAATGCTGTGTGGGCTACTGGTGAATCCCAAAGCCACCATTGCTTCAATGGGGATTCTAATCCAAACAACCTCTTTAGTCTATGTCTTCCCCTCATCTCTTAGCCTTGGAGTTTCCACAAGAGTGGGGAATGAGTTGGGCGCCAACCGACCCGGAAAAGCCCGCATTTCCATGATAGTTTCCCTGTTTTGTGCAGTGGCTTTGGGCCTCGTAGCTATGGTGTTCACCACCTTAATGAGACATCAATGGGCACGATTCTTCACCACAGACTCTGAAATTCTCAATCTCACAGCAATTGCATTGCCAATTTCAGGGCTTTGCGAACTCGGAAACTGCCCACAGACCACTGGTTGTGGAGTTCTAAGAGGAAGCGCGAGACCTACCATTGGAGCAAACATCAATTTGGGTTCGTTTTACTTGGTGGGCATGCCGGTGGCGATTCTCCTCGGATTTGTGGCCAAAATGGGATTTGCAGGACTCTGGCTGGGGTTGCTTGCGGCCCAAGCCTCGTGTTCGCTGCTCATGCTATTTGTTCTCGGCAGAACAGATTGGAATATGCAAGCAGACAGAGCAAGGGAGCTCACAAAGAGTTCAACCACTCCTGCAGCTGCTTCTGCATTGCCCACGTTCGCAAAAGCAGAGCCTAACATGAATCCTCATCTTGAACAGATAGTGATCATTGAAGATGATCAGCTTAACAATTCATCAGAAACAGACCCTTTGATTATACCCACTACCGCCAAACAACACACTGTCAATTA 1640 0.4427 MCNPKPSSASPFLCPTKTHLLSSHKVMDPDDQDKLHRWPTPNEVLEEIRAIGKISGPTAITGLLLYSRAMISMLFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQRKLLGLTLQRTVLLLLSISIPISFMWLNMKRILLWSGQDEEISSMAQTFIIFSIPDLFFLSLLHPLRIYLRTQNVTLPLTYCSAISVLLHVPLNFLLVVQLKMGIAGVAIAMVWTNLNLFLLLSSFVFFSGVYKDSWVIPSMDCIRGWSSLLALAVPSCVSVCLEWWWYEFMIMLCGLLVNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPGKARISMIVSLFCAVALGLVAMVFTTLMRHQWARFFTTDSEILNLTAIALPISGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAILLGFVAKMGFAGLWLGLLAAQASCSLLMLFVLGRTDWNMQADRARELTKSSTTPAAASALPTFAKAEPNMNPHLEQIVIIEDDQLNNSSETDPLIIPTTAKQHTVN 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02600 546 PANTHER MULTIDRUG RESISTANCE PROTEIN 27 501 - -
Bva06g02600 546 Pfam MatE 278 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bva06g02600 546 Pfam MatE 57 217 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bva06g02600 546 TIGRFAM matE: MATE efflux family protein 63 454 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bva06g02600 546 PANTHER PROTEIN DETOXIFICATION 27 501 - -
Bva06g02600 546 CDD MATE_eukaryotic 47 481 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02600 Bva-Chr6 16417531 16419682 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02600 K03327 - rcu:8288072 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02600 06 16417531 16419682 Bva06g02600 06 16417531 16419682 ECH