Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02584 ATGGGTTTCGGTTTCCGGCTCAACCTCAGGTGTAGTGTTCCAGTTCAGTCTGCTCACTCTTTCGCCAATTCACCTATCAGGCTTTCTTCCTCTTTGGCTAGAGGCAGGGAAACTTCTTTGAACCTCACAAGGTTATCTTTGCTGTCAACTCTTTGTGAGGAGGCAGAAACTTCCCAAAAAGATTCTCGAAGACCATACACTTGTTCATCATCACCTTTGGAAATCCTGGATAATGATTTCgtagaaatagaagaaacgAAGataaacaaaacaaagaggCCGCGAAGCAGTGTCCATAAAATGATTGACAATAGCCTGATGGCATCTGGAAATGAGATGTCTACGGAATCTACAAACTTTCAACCATTCAGGGCATCACATTTTCGTTTGTTAATGGAAAACCTTGGTATCTTAGAAGAAACTTTTGCTGATTCGGAAGCAGTAAGGTTGAAAAAGGAGATTATATTGCAACTTGGAAAGTTTGGAGCTTTGGAATTATTCAATAACCGTTTGTCAAAGTCTCTTGAAAGCCCATGTGCTTTGGATTGTTCTGATGGACATCCTGAACAAGTTGGAGAGCATCATGCAAACAACAAAGCACATGACCAGTTGGGTAAAGTTGTTGTTCGTTCtaggaggaaaaaagaaaataaatcaagaaagagacCATTATGTGCCTCTGAAGTTTCATCGTGCCAGTCATTACCTTCAAAAGTTACTCAGGGAAGTCTGTTAGATTTTCCAGATTCATCTGTAAAAAGAGTATCAAATGGTAAAAATAGAAGAGGAATGGTTGCTAGAAAGGAGGCAGAAATGTCAAAAGCAATAAAGGTGCTAGCGGAATTGGAAAGAACTAGAGCTGCAATGGAAGAGGATACCAAACAAATAGCAAGCTTGAGTGCTTGGGCAGAAGCATGTGGAGTTGATGAGAAGGTGCTAAGGCAGCAATTGCGTTATGGTCGGTATTGTAGGGATGAGCTTATACGGAGTACTCGTTCTTTAGTTCTATACCTGGCCAGGAATTACCGGGGTATGGGAATAGCAATGGAAGATTTGCTCCAGGCAGGATATGTAGGTGTTCTCCAAGGTGCAGAGAGATTTGATTGTACAAGGGGTTACAGATTCTCAACCTATGTGCAGTACTGGATAAGGAAATCAATGTCAAGAATGGTGACACGATATGCTCGGGGCATCCTGATTCCTTGGTCATTGAACAGGGCAGTAAGTCAGATACAGAAAGCACGAAAAGCCCTGAAAAGTACTGCCATGAAATCTCCTGATGATTATGAAATCGCAAAGATGACAGGTCTTTCTTTGGATAAAATCAGATCAGCTAGCAATTGTCTGAGAGTTGTGGGTTCAATTAATCAGAAGGTGGGAGATTGCCTTAACGTACAATATATGCAAGTTATGCCCGATACATCAATTGGGTGCCCTGAAGAAGCTGTTATGCAGCAGCACAAGAGAAAAGACATTTATGATCTCCTGAAAGGTTTGAATCCAAGGGAAAGGCAAATATTAACCCTACGCTTTGGTCTTAATGATCACCAGCGCAGGTCTCTCGAGGACATAGGGAGGGTTTTAAATGTTAGCAAGGAGTGGGTGAGGAAGATAGAGAAGAATGCTCTAACAAAGCTACGGAATGAATCAatcaacttaaatttaaattattatttggatttgtA 1685 0.3947 MGFGFRLNLRCSVPVQSAHSFANSPIRLSSSLARGRETSLNLTRLSLLSTLCEEAETSQKDSRRPYTCSSSPLEILDNDFVEIEETKINKTKRPRSSVHKMIDNSLMASGNEMSTESTNFQPFRASHFRLLMENLGILEETFADSEAVRLKKEIILQLGKFGALELFNNRLSKSLESPCALDCSDGHPEQVGEHHANNKAHDQLGKVVVRSRRKKENKSRKRPLCASEVSSCQSLPSKVTQGSLLDFPDSSVKRVSNGKNRRGMVARKEAEMSKAIKVLAELERTRAAMEEDTKQIASLSAWAEACGVDEKVLRQQLRYGRYCRDELIRSTRSLVLYLARNYRGMGIAMEDLLQAGYVGVLQGAERFDCTRGYRFSTYVQYWIRKSMSRMVTRYARGILIPWSLNRAVSQIQKARKALKSTAMKSPDDYEIAKMTGLSLDKIRSASNCLRVVGSINQKVGDCLNVQYMQVMPDTSIGCPEEAVMQQHKRKDIYDLLKGLNPRERQILTLRFGLNDHQRRSLEDIGRVLNVSKEWVRKIEKNALTKLRNESINLNLNYYLDL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02584 561 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 11 560 - -
Bva06g02584 561 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 460 559 IPR013324 -
Bva06g02584 561 Pfam Sigma-70 region 2 327 395 IPR007627 GO:0003700|GO:0006352|GO:0006355
Bva06g02584 561 Gene3D - 399 551 - -
Bva06g02584 561 Pfam Sigma-70, region 4 495 548 IPR007630 GO:0003700|GO:0006352|GO:0006355
Bva06g02584 561 CDD Sigma70_r4 489 547 - -
Bva06g02584 561 Coils Coil 265 299 - -
Bva06g02584 561 MobiDBLite consensus disorder prediction 187 223 - -
Bva06g02584 561 Gene3D - 212 396 - -
Bva06g02584 561 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 324 549 IPR014284 GO:0003700|GO:0006352|GO:0006355
Bva06g02584 561 PRINTS Major sigma-70 factor signature 375 383 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva06g02584 561 PRINTS Major sigma-70 factor signature 535 546 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva06g02584 561 PRINTS Major sigma-70 factor signature 351 364 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva06g02584 561 PRINTS Major sigma-70 factor signature 520 535 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva06g02584 561 PRINTS Major sigma-70 factor signature 499 511 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bva06g02584 561 MobiDBLite consensus disorder prediction 187 210 - -
Bva06g02584 561 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 400 472 IPR013324 -
Bva06g02584 561 Pfam Sigma-70 region 3 409 482 IPR007624 GO:0003700|GO:0006352|GO:0006355
Bva06g02584 561 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 11 560 - -
Bva06g02584 561 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 267 396 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02584 K03093 - gmx:100802522 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02584 06 16316364 16320231 Bva06g02584 06 16316364 16320231 ECH