Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g02576 ATGCCTCCTCGTGTCTCTCTTATCCTCCGCCCGCTCCACCTTCGTCTTTTGGCCTCTGTTCCTGTAATGGCGCGTGCCAGTACTTGCGCCACCCaacttcatttctatcctgcCCCGAACAATGCCACTTCTGTTCGCTCCTCTTTGCATTTTCCTTCTGTCTATTTTTCTCATCGTTTCGATGCTTCTTTGCTTATCAATTCCTCTCTATTCGATCGGAGATTTCATGTTCCGTGTCGAAATGAAGGGAAATATTTGGGGGCATTTGGGGCAGTTCGTGCCGGGCAGAGGGAGTATCGGAAGGTGAGAAAGCGAGCACGGAAGACCAAAGAGAAGGACTTGGAACTCAATGTCAACATTTGCATTGAAGAAGAATTGCCTGACGATCCTGAGATTTTGAACATTGCAGAGTTGCTTCGTCTAAATTTAGCAATGGCAATGAAGTCGGCATTTGATAGACTAATAGATAGAGGATATAAAACGAGAGATACCGCTATAACTGATGTTGGTAGTTTTGAAAGCATTGAGCTTTCTGTGCTTCTTTGCAATGATGAGTTTATTCGCAAACTTAATAAGGAGTGGAGGGATGAGGATCATCCCACTGATGTTCTTTCAATGTCACAACATGTCCCTGAGCTTAAGCTTCCTATTCTTATGTTGGGTGACATTGTCATTTCAGTTGAGACGGCTGCGAGACAAGCAGAGGAGAGAGGGCACGCTCTTCTTGATGAAATACGCATCCTCATGGTTCATGGCTTGTTACATCTTTTGGGATTTGATCATGAAATTAGTGAAGAGGCTGAAGCAGAGATGGAGAAAGAGGAGGAACTCCTTTTAAAGAGTCTTGGTTGGAAAGGAAAAGGGCTGATACAGAGTGCATATGATGCTAAAGCCAATTCAAATCCTCTTGGAGACAATTCAGATGACAGGAAGAAAGAAGGCAGAACTAGATTTTATAAACCAAAGTTCAGCTATATCTTCTGTGATATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTCCAACAACTGCCAAGGCCTTGAGAGAGGCCTTATCGAGGGGTATCAAAATTGTGATAGCCACGGGAAAAGCCCGGCCAGCAGTAATAGATATTTTCAAGATGGTGGGTTTAGCTGGAAAAGATGGCATTGTTTCAGAATTTTCTCCCGGGGTCTTCTTACAAGGATTGCTTGTTTATGGTAGACAAGGTGGGGAAATTTTTAGAAGCAACTTAGATCCAAATATTTGTAGAGAGGCATGTCTTTACTCTTTGGAGAATAAGGTTCCCCTTGTTGCATTTTGTGAGAATCGCTGCCTAACCCTTTTTGAAGACCCACTTGTCGATTCACTGCATACAGTATACCATGAGCCTAAGGCAGAGGTCATGCCTTCTACTGAACATCTCCTGGCTGCTGCTGACATACAGaaaatgattttctttgaCACTGCTGAGAGAGTGGCTGCTATATTGCGGCCACACTGGTCGGGGGTAACAAAGGATCGTGCCACTGTTGTACAAGCTGTGCCAGACATGCTCGAAATTGTACCCTTGGGAACATCAAAAGGGAATGGAGTAAAAATGCTGCTGGATCATTTGGGGGTTACTGTTAAGGAGATAATGGCTATTGGTGATGGGGAAAATGATATTGAGATGCTTAAACTAGCTTCCCTAGGCATTGCTCTTAGTAATGGATCAGAGAAAACGAAAGCCGTGGCTGATGCAATTGGTTTGAGCAATGATGAAGAAGGTGCAGCCGATGCCATCTACCGGTATGCGTTCTG 1787 0.4342 MARASTCATQLHFYPAPNNATSVRSSLHFPSVYFSHRFDASLLINSSLFDRRFHVPCRNEGKYLGAFGAVRAGQREYRKVRKRARKTKEKDLELNVNICIEEELPDDPEILNIAELLRLNLAMAMKSAFDRLIDRGYKTRDTAITDVGSFESIELSVLLCNDEFIRKLNKEWRDEDHPTDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHALLDEIRILMVHGLLHLLGFDHEISEEAEAEMEKEEELLLKSLGWKGKGLIQSAYDAKANSNPLGDNSDDELSKDRKKEGRTRFYKPKFSYIFCDMDGTLLNSKSQISPTTAKALREALSRGIKIVIATGKARPAVIDIFKMVGLAGKDGIVSEFSPGVFLQGLLVYGRQGGEIFRSNLDPNICREACLYSLENKVPLVAFCENRCLTLFEDPLVDSLHTVYHEPKAEVMPSTEHLLAAADIQKMIFFDTAERVAAILRPHWSGVTKDRATVVQAVPDMLEIVPLGTSKGNGVKMLLDHLGVTVKEIMAIGDGENDIEMLKLASLGIALSNGSEKTKAVADAIGLSNDEEGAADAIYRYAF 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g02576 578 Gene3D Metalloproteases ("zincins"), catalytic domain 120 266 IPR023091 GO:0004222
Bva06g02576 578 Hamap Endoribonuclease YbeY [ybeY]. 95 264 IPR002036 GO:0004222|GO:0006364
Bva06g02576 578 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 1 578 - -
Bva06g02576 578 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 308 545 IPR006379 -
Bva06g02576 578 Pfam Endoribonuclease YbeY 147 259 IPR002036 GO:0004222|GO:0006364
Bva06g02576 578 ProSitePatterns Hypothetical cof family signature 1. 308 319 - -
Bva06g02576 578 SFLD C2.B: Phosphomannomutase and Phosphatase Like 309 577 - -
Bva06g02576 578 Gene3D - 395 502 - -
Bva06g02576 578 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 1 578 IPR002036 GO:0004222|GO:0006364
Bva06g02576 578 ProSitePatterns Uncharacterized protein family UPF0054 signature. 229 239 IPR020549 -
Bva06g02576 578 ProSitePatterns Hypothetical cof family signature 2. 527 549 - -
Bva06g02576 578 Gene3D - 309 573 IPR023214 -
Bva06g02576 578 TIGRFAM Cof-subfamily: Cof-like hydrolase 308 573 IPR000150 GO:0016787
Bva06g02576 578 SFLD Haloacid Dehalogenase 309 577 - -
Bva06g02576 578 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 146 267 - -
Bva06g02576 578 TIGRFAM TIGR00043: rRNA maturation RNase YbeY 154 260 IPR002036 GO:0004222|GO:0006364
Bva06g02576 578 CDD HAD_Pase 309 575 - -
Bva06g02576 578 Pfam haloacid dehalogenase-like hydrolase 309 573 - -
Bva06g02576 578 SUPERFAMILY HAD-like 302 576 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g02576 Bva-Chr6 16274107 16279376 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g02576 - - adu:107495129 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g02576 06 16274107 16279376 Bva06g02576 06 16274107 16279376 ECH